BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2405117.2.2
         (800 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AW574197.1|AW574197  EST316788 GVN Medicago truncatula cD...    40   0.28 
gb|BG454482.1|BG454482  NF109G07LF1F1053 Developing leaf Med...    40   0.28 
gb|BG647282.1|BG647282  EST508901 HOGA Medicago truncatula c...    40   0.28 
gb|BI311354.1|BI311354  EST5313104 GESD Medicago truncatula ...    40   0.28 
gb|BQ165582.1|BQ165582  EST611451 KVKC Medicago truncatula c...    40   0.28 
gb|BQ165583.1|BQ165583  EST611452 KVKC Medicago truncatula c...    40   0.28 
gb|CB894697.1|CB894697  EST647489 HOGA Medicago truncatula c...    40   0.28 
gb|AC135102.16|  Medicago truncatula clone mth2-8m3, complet...    40   0.28 

>gb|AW574197.1|AW574197 EST316788 GVN Medicago truncatula cDNA clone pGVN-51L17, mRNA
           sequence
          Length = 496

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 334 atgatctacaactactgcac 353
           ||||||||||||||||||||
Sbjct: 252 atgatctacaactactgcac 271



>gb|BG454482.1|BG454482 NF109G07LF1F1053 Developing leaf Medicago truncatula cDNA clone
           NF109G07LF 5', mRNA sequence
          Length = 414

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 131 tcccacgcccccttctccgcctcc 154
           ||||||||| ||||||||||||||
Sbjct: 180 tcccacgccaccttctccgcctcc 157



>gb|BG647282.1|BG647282 EST508901 HOGA Medicago truncatula cDNA clone pHOGA-16O5 5' end,
           mRNA sequence
          Length = 759

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 334 atgatctacaactactgcac 353
           ||||||||||||||||||||
Sbjct: 688 atgatctacaactactgcac 707



>gb|BI311354.1|BI311354 EST5313104 GESD Medicago truncatula cDNA clone pGESD10L1 5' end,
           mRNA sequence
          Length = 763

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 131 tcccacgcccccttctccgcctcc 154
           ||||||||| ||||||||||||||
Sbjct: 260 tcccacgccaccttctccgcctcc 237



>gb|BQ165582.1|BQ165582 EST611451 KVKC Medicago truncatula cDNA clone pKVKC-10C6, mRNA
           sequence
          Length = 714

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 131 tcccacgcccccttctccgcctcc 154
           ||||||||| ||||||||||||||
Sbjct: 476 tcccacgccaccttctccgcctcc 453



>gb|BQ165583.1|BQ165583 EST611452 KVKC Medicago truncatula cDNA clone pKVKC-10C6, mRNA
           sequence
          Length = 714

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 131 tcccacgcccccttctccgcctcc 154
           ||||||||| ||||||||||||||
Sbjct: 605 tcccacgccaccttctccgcctcc 628



>gb|CB894697.1|CB894697 EST647489 HOGA Medicago truncatula cDNA clone HOGA-32G9, mRNA
           sequence
          Length = 350

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 334 atgatctacaactactgcac 353
           ||||||||||||||||||||
Sbjct: 181 atgatctacaactactgcac 200



>gb|AC135102.16| Medicago truncatula clone mth2-8m3, complete sequence
          Length = 144042

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 131   tcccacgcccccttctccgcctcc 154
             ||||||||| ||||||||||||||
Sbjct: 50249 tcccacgccaccttctccgcctcc 50272



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 68,070
Number of Sequences: 392609
Number of extensions: 68070
Number of successful extensions: 4880
Number of sequences better than  0.5: 8
Number of HSP's better than  0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4872
Number of HSP's gapped (non-prelim): 8
length of query: 800
length of database: 441,732,993
effective HSP length: 20
effective length of query: 780
effective length of database: 433,880,813
effective search space: 338427034140
effective search space used: 338427034140
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)