BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404928.2.2
(1151 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|CT573076.1| Medicago truncatula chromosome 5 clone mth2... 76 7e-012
gb|BQ154941.1|BQ154941 NF074E06IR1F1051 Irradiated Medicago... 64 3e-008
gb|CX529733.1|CX529733 s13dNF52B09MJ074_245512 Methyl Jasmo... 58 2e-006
gb|CG926828.1|CG926828 MBEJS27TRB mth2 Medicago truncatula ... 40 0.41
gb|CG964111.1|CG964111 MBEIC11TF mth2 Medicago truncatula g... 40 0.41
>emb|CT573076.1| Medicago truncatula chromosome 5 clone mth2-181d5, COMPLETE SEQUENCE
Length = 89591
Score = 75.8 bits (38), Expect = 7e-012
Identities = 107/130 (82%)
Strand = Plus / Minus
Query: 606 cctgataggtttccatggccttgtcatattctttcatgaagaattgaattgcacctttcc 665
||||||| ||||||| ||||| ||||||||||||||||| || |||| ||||| ||||
Sbjct: 17408 cctgatatgtttccaaagccttttcatattctttcatgaaaaactgaaccgcacccttcc 17349
Query: 666 ttgtgtaccctttagtgaaggtggggtctagttcaagacacttctctgcatctttaagac 725
|| || || || |||||||| || || || |||| ||||||||||||||| || | ||
Sbjct: 17348 gagtataacccttggtgaaggtcggatcaagctcaatacacttctctgcatcctttaaac 17289
Query: 726 cttcaggcat 735
||||||||||
Sbjct: 17288 cttcaggcat 17279
Score = 44.1 bits (22), Expect = 0.026
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 863 cctttctctctctcctcatctgctaattttggatcatagtactcttgttg 912
||||| |||||||||||||| || || |||||||| |||| ||||||||
Sbjct: 16932 cctttttctctctcctcatcagccaaatttggatcgaagtattcttgttg 16883
>gb|BQ154941.1|BQ154941 NF074E06IR1F1051 Irradiated Medicago truncatula cDNA clone
NF074E06IR 5', mRNA sequence
Length = 631
Score = 63.9 bits (32), Expect = 3e-008
Identities = 107/131 (81%), Gaps = 1/131 (0%)
Strand = Plus / Minus
Query: 606 cctgataggtttccatggccttgtcatattctttcatgaagaattgaa-ttgcacctttc 664
||||||| ||||||| ||||| ||||||||||||||||| || |||| ||||| |||
Sbjct: 195 cctgatatgtttccaaagccttttcatattctttcatgaaaaactgaaccngcacccttc 136
Query: 665 cttgtgtaccctttagtgaaggtggggtctagttcaagacacttctctgcatctttaaga 724
| || || || || |||||||| || || || |||| ||||||||||||||| || | |
Sbjct: 135 cgagtataacccttggtgaaggtcggatcaagctcaatacacttctctgcatcctttaaa 76
Query: 725 ccttcaggcat 735
|||||||||||
Sbjct: 75 ccttcaggcat 65
>gb|CX529733.1|CX529733 s13dNF52B09MJ074_245512 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 611
Score = 58.0 bits (29), Expect = 2e-006
Identities = 182/233 (78%)
Strand = Plus / Minus
Query: 680 gtgaaggtggggtctagttcaagacacttctctgcatctttaagaccttcaggcatggct 739
|||||||| || || || |||| ||||||||||||||| || | |||||||||||| ||
Sbjct: 610 gtgaaggtcggatcaagctcaatacacttctctgcatcctttaaaccttcaggcattgcc 551
Query: 740 cctaacttggtgtagcaggcagccctattgctgtaaaccctaggatcctttgggtttctc 799
|| | || ||||| || ||||| || || || ||| || |||||| | |||||||||
Sbjct: 550 cccagttttgtgtaacatgcagctctgttactataagccttaggattttgtgggtttctt 491
Query: 800 ttgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttgaagaactcg 859
|| | || ||| ||||| || || || ||||| || || || |||| ||| ||| | ||
Sbjct: 490 tttatagactctgtgtaatgcttaatagcttcaggatacttctgctgcttaaagtattca 431
Query: 860 ttgcctttctctctctcctcatctgctaattttggatcatagtactcttgttg 912
|| ||||| |||||||||||||| || || |||||||| |||| ||||||||
Sbjct: 430 ttccctttttctctctcctcatcagccaaatttggatcgaagtattcttgttg 378
>gb|CG926828.1|CG926828 MBEJS27TRB mth2 Medicago truncatula genomic clone 70F5, DNA
sequence
Length = 900
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 185 aatccaattggggaagaaaa 204
||||||||||||||||||||
Sbjct: 26 aatccaattggggaagaaaa 45
>gb|CG964111.1|CG964111 MBEIC11TF mth2 Medicago truncatula genomic clone 60B21, DNA
sequence
Length = 746
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 185 aatccaattggggaagaaaa 204
||||||||||||||||||||
Sbjct: 31 aatccaattggggaagaaaa 50
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 374,923
Number of Sequences: 392609
Number of extensions: 374923
Number of successful extensions: 30186
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30164
Number of HSP's gapped (non-prelim): 22
length of query: 1151
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1131
effective length of database: 433,880,813
effective search space: 490719199503
effective search space used: 490719199503
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)