BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404928.2.1
(932 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|CT573076.1| Medicago truncatula chromosome 5 clone mth2... 100 4e-019
gb|BQ154941.1|BQ154941 NF074E06IR1F1051 Irradiated Medicago... 88 2e-015
gb|CX529733.1|CX529733 s13dNF52B09MJ074_245512 Methyl Jasmo... 50 3e-004
gb|AC126794.15| Medicago truncatula clone mth2-24j7, comple... 42 0.083
gb|BG582332.1|BG582332 EST484074 GVN Medicago truncatula cD... 40 0.33
>emb|CT573076.1| Medicago truncatula chromosome 5 clone mth2-181d5, COMPLETE SEQUENCE
Length = 89591
Score = 99.6 bits (50), Expect = 4e-019
Identities = 140/170 (82%)
Strand = Plus / Minus
Query: 451 tcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtaggtttccacggcc 510
||||||| |||||||||||| | ||||| ||||| || |||| || ||||||| |||
Sbjct: 17448 tcaagcaattcctggttgtttgcatcatgtttcaacccttcctgatatgtttccaaagcc 17389
Query: 511 ttgtcatattctttcatgaagaactgaattgcacctttcctcgtataccctttggtgaag 570
|| ||||||||||||||||| ||||||| ||||| |||| ||||| || |||||||||
Sbjct: 17388 ttttcatattctttcatgaaaaactgaaccgcacccttccgagtataacccttggtgaag 17329
Query: 571 gtggggtcaagttcaagacacttttctgcgtctttaagaccttcaggcat 620
|| || ||||| |||| |||||| ||||| || || | ||||||||||||
Sbjct: 17328 gtcggatcaagctcaatacacttctctgcatcctttaaaccttcaggcat 17279
Score = 50.1 bits (25), Expect = 3e-004
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 748 cctttctctctctcctcatctgccaattttggatcataaaactcttgttgctctaactct 807
||||| |||||||||||||| ||||| |||||||| | | |||||||| |||| |||
Sbjct: 16932 cctttttctctctcctcatcagccaaatttggatcgaagtattcttgttgttctagttct 16873
Query: 808 ttctttgctttctcagc 824
||||| || ||||||||
Sbjct: 16872 ttcttggccttctcagc 16856
>gb|BQ154941.1|BQ154941 NF074E06IR1F1051 Irradiated Medicago truncatula cDNA clone
NF074E06IR 5', mRNA sequence
Length = 631
Score = 87.7 bits (44), Expect = 2e-015
Identities = 140/171 (81%), Gaps = 1/171 (0%)
Strand = Plus / Minus
Query: 451 tcaagcagttcctggttgttcgggtcatgcttcaagccagcctggtaggtttccacggcc 510
||||||| |||||||||||| | ||||| ||||| || |||| || ||||||| |||
Sbjct: 235 tcaagcaattcctggttgtttgcatcatgtttcaacccttcctgatatgtttccaaagcc 176
Query: 511 ttgtcatattctttcatgaagaactgaa-ttgcacctttcctcgtataccctttggtgaa 569
|| ||||||||||||||||| ||||||| ||||| |||| ||||| || ||||||||
Sbjct: 175 ttttcatattctttcatgaaaaactgaaccngcacccttccgagtataacccttggtgaa 116
Query: 570 ggtggggtcaagttcaagacacttttctgcgtctttaagaccttcaggcat 620
||| || ||||| |||| |||||| ||||| || || | ||||||||||||
Sbjct: 115 ggtcggatcaagctcaatacacttctctgcatcctttaaaccttcaggcat 65
>gb|CX529733.1|CX529733 s13dNF52B09MJ074_245512 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 611
Score = 50.1 bits (25), Expect = 3e-004
Identities = 202/261 (77%)
Strand = Plus / Minus
Query: 564 ggtgaaggtggggtcaagttcaagacacttttctgcgtctttaagaccttcaggcatggc 623
||||||||| || ||||| |||| |||||| ||||| || || | |||||||||||| ||
Sbjct: 611 ggtgaaggtcggatcaagctcaatacacttctctgcatcctttaaaccttcaggcattgc 552
Query: 624 tcctaacttggtgtagcaggcggccctattgctataaaccctaggatccttcgggtttct 683
|| | || ||||| || || || || || |||||| || |||||| | ||||||||
Sbjct: 551 ccccagttttgtgtaacatgcagctctgttactataagccttaggattttgtgggtttct 492
Query: 684 cttgagagcctccgtgtagtgttttattgcttctgggtatttttgctccttgaagaactc 743
|| | || ||| ||||| || || || ||||| || || || |||| ||| ||| | ||
Sbjct: 491 ttttatagactctgtgtaatgcttaatagcttcaggatacttctgctgcttaaagtattc 432
Query: 744 gttgcctttctctctctcctcatctgccaattttggatcataaaactcttgttgctctaa 803
|| ||||| |||||||||||||| ||||| |||||||| | | |||||||| ||||
Sbjct: 431 attccctttttctctctcctcatcagccaaatttggatcgaagtattcttgttgttctag 372
Query: 804 ctctttctttgctttctcagc 824
|||||||| || ||||||||
Sbjct: 371 ttctttcttggccttctcagc 351
>gb|AC126794.15| Medicago truncatula clone mth2-24j7, complete sequence
Length = 129513
Score = 42.1 bits (21), Expect = 0.083
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 281 cacttgggttctcctggaaat 301
|||||||||||||||||||||
Sbjct: 122960 cacttgggttctcctggaaat 122980
>gb|BG582332.1|BG582332 EST484074 GVN Medicago truncatula cDNA clone pGVN-69I20 5' end,
mRNA sequence
Length = 836
Score = 40.1 bits (20), Expect = 0.33
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 44 caaacatgaattatccaatgtcaa 67
||||||||||||| ||||||||||
Sbjct: 796 caaacatgaattaaccaatgtcaa 819
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 256,085
Number of Sequences: 392609
Number of extensions: 256085
Number of successful extensions: 19740
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19723
Number of HSP's gapped (non-prelim): 16
length of query: 932
length of database: 441,732,993
effective HSP length: 20
effective length of query: 912
effective length of database: 433,880,813
effective search space: 395699301456
effective search space used: 395699301456
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)