BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404801.2.3
(1028 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL374004.1|AL374004 MtBB04B02F1 MtBB Medicago truncatula... 133 3e-029
gb|BG582103.1|BG582103 EST483841 GVN Medicago truncatula cD... 133 3e-029
gb|BI266886.1|BI266886 NF094H07IN1F1064 Insect herbivory Me... 133 3e-029
gb|CB893980.1|CB893980 EST646772 HOGA Medicago truncatula c... 125 8e-027
gb|BQ124258.1|BQ124258 EST609834 GLSD Medicago truncatula c... 123 3e-026
gb|BG582102.1|BG582102 EST483840 GVN Medicago truncatula cD... 119 5e-025
gb|BQ124409.1|BQ124409 EST609985 GLSD Medicago truncatula c... 113 3e-023
gb|BG647007.1|BG647007 EST508626 HOGA Medicago truncatula c... 109 5e-022
gb|BI272316.1|BI272316 NF017C11FL1F1085 Developing flower M... 109 5e-022
gb|AW329273.2|AW329273 N200493e rootphos(-) Medicago trunca... 107 2e-021
gb|BF636246.1|BF636246 NF059A07DT1F1052 Drought Medicago tr... 107 2e-021
gb|BE249354.2|BE249354 NF014E10LF1F1082 Developing leaf Med... 107 2e-021
gb|CA922986.1|CA922986 EST640704 MTUS Medicago truncatula c... 107 2e-021
gb|BQ750503.1|BQ750503 EST633239 KVKC Medicago truncatula c... 94 3e-017
gb|AC131455.5| Medicago truncatula clone mth1-42h9, complet... 86 7e-015
gb|AC124972.41| Medicago truncatula clone mth2-24j4, comple... 86 7e-015
gb|BI309835.1|BI309835 EST5311585 GESD Medicago truncatula ... 80 4e-013
gb|AJ499890.1|AJ499890 AJ499890 MTGIM Medicago truncatula c... 70 4e-010
gb|AQ580105.1|AQ580105 T135662b shotgun sub-library of BAC ... 64 2e-008
gb|BI271282.1|BI271282 NF053G12FL1F1100 Developing flower M... 64 2e-008
gb|AQ580029.1|AQ580029 T135582b shotgun sub-library of BAC ... 56 6e-006
gb|BI311950.1|BI311950 EST5313700 GESD Medicago truncatula ... 56 6e-006
gb|BG450825.1|BG450825 NF093E10DT1F1081 Drought Medicago tr... 54 2e-005
emb|CT030192.6| M.truncatula DNA sequence from clone MTH2-1... 48 0.001
gb|CG921028.1|CG921028 MBEBT44TF mth2 Medicago truncatula g... 40 0.36
gb|AL389157.1|AL389157 MtBC53B05F1 MtBC Medicago truncatula... 40 0.36
gb|BI309506.1|BI309506 EST530916 GPOD Medicago truncatula c... 40 0.36
>gb|AL374004.1|AL374004 MtBB04B02F1 MtBB Medicago truncatula cDNA clone MtBB04B02 T3, mRNA
sequence
Length = 492
Score = 133 bits (67), Expect = 3e-029
Identities = 304/383 (79%)
Strand = Plus / Plus
Query: 285 caaatcatcgaggcttgcaaatttcttgatgagaaatggaatcccaagttcacgttgatt 344
|||||||| ||||| ||||||||||||||||| || ||||| ||||| || | | |||
Sbjct: 25 caaatcattgaggcctgcaaatttcttgatgaaaagtggaaccccaaatttctggttatt 84
Query: 345 attgcccagaagaatcatcacactaaatttttcattcctggaaagccagataatgtccca 404
|||||||||||||||||||||| || || ||| |||||| || |||||||| ||
Sbjct: 85 gttgcccagaagaatcatcacacaaagttcttccagcctggatctccggataatgtgcct 144
Query: 405 ccaggaactgtggtggacaacaaagtctgccatccaaagaacttcgatttctacatgtgt 464
|| || ||||| |||||||||||| |||| ||||| ||| | |||||||||||||||
Sbjct: 145 cctggtactgttgtggacaacaaaatctgtcatccccggaattatgatttctacatgtgt 204
Query: 465 gcgcatgctggaatgatcgggactacgaggccaactcactaccacatcctgcatgatgag 524
|| |||||||||||||| || || | ||||||||||| || || |||| ||||||
Sbjct: 205 gctcatgctggaatgattggtaccagtaggccaactcattatcatgtccttttggatgag 264
Query: 525 ataggcttcagtcctgatgatctgcaggagctggtgcattcgctctcttatgtgtaccaa 584
|| ||||| ||| |||||||| || ||||| ||||| || ||||| ||||| || ||
Sbjct: 265 attggcttttctccagatgatcttcaagagcttgtgcactctctctcctatgtttatcag 324
Query: 585 aggagcacaacagccatatcagtcgttgctcccatctgctacgcacatctggcagctgct 644
||||||| || ||||| || || |||||||| |||||||| || ||| |||| ||| ||
Sbjct: 325 cggagcactactgccatctctgttgttgctccaatctgctatgcccatttggctgcttct 384
Query: 645 caggttggccagttcataaagtt 667
|| || || |||||||| |||||
Sbjct: 385 caagtgggacagttcatgaagtt 407
>gb|BG582103.1|BG582103 EST483841 GVN Medicago truncatula cDNA clone pGVN-66B2 5' end, mRNA
sequence
Length = 830
Score = 133 bits (67), Expect = 3e-029
Identities = 304/383 (79%)
Strand = Plus / Plus
Query: 285 caaatcatcgaggcttgcaaatttcttgatgagaaatggaatcccaagttcacgttgatt 344
|||||||| ||||| ||||||||||||||||| || ||||| ||||| || | | |||
Sbjct: 287 caaatcattgaggcctgcaaatttcttgatgaaaagtggaaccccaaatttctggttatt 346
Query: 345 attgcccagaagaatcatcacactaaatttttcattcctggaaagccagataatgtccca 404
|||||||||||||||||||||| || || ||| |||||| || |||||||| ||
Sbjct: 347 gttgcccagaagaatcatcacacaaagttcttccagcctggatctccggataatgtgcct 406
Query: 405 ccaggaactgtggtggacaacaaagtctgccatccaaagaacttcgatttctacatgtgt 464
|| || ||||| |||||||||||| |||| ||||| ||| | |||||||||||||||
Sbjct: 407 cctggtactgttgtggacaacaaaatctgtcatccccggaattatgatttctacatgtgt 466
Query: 465 gcgcatgctggaatgatcgggactacgaggccaactcactaccacatcctgcatgatgag 524
|| |||||||||||||| || || | ||||||||||| || || |||| ||||||
Sbjct: 467 gctcatgctggaatgattggtaccagtaggccaactcattatcatgtccttttggatgag 526
Query: 525 ataggcttcagtcctgatgatctgcaggagctggtgcattcgctctcttatgtgtaccaa 584
|| ||||| ||| |||||||| || ||||| ||||| || ||||| ||||| || ||
Sbjct: 527 attggcttttctccagatgatcttcaagagcttgtgcactctctctcctatgtttatcag 586
Query: 585 aggagcacaacagccatatcagtcgttgctcccatctgctacgcacatctggcagctgct 644
||||||| || ||||| || || |||||||| |||||||| || ||| |||| ||| ||
Sbjct: 587 cggagcactactgccatctctgttgttgctccaatctgctatgcccatttggctgcttct 646
Query: 645 caggttggccagttcataaagtt 667
|| || || |||||||| |||||
Sbjct: 647 caagtgggacagttcatgaagtt 669
>gb|BI266886.1|BI266886 NF094H07IN1F1064 Insect herbivory Medicago truncatula cDNA clone
NF094H07IN 5', mRNA sequence
Length = 642
Score = 133 bits (67), Expect = 3e-029
Identities = 304/383 (79%)
Strand = Plus / Plus
Query: 285 caaatcatcgaggcttgcaaatttcttgatgagaaatggaatcccaagttcacgttgatt 344
|||||||| ||||| ||||||||||||||||| || ||||| ||||| || | | |||
Sbjct: 42 caaatcattgaggcctgcaaatttcttgatgaaaagtggaaccccaaatttctggttatt 101
Query: 345 attgcccagaagaatcatcacactaaatttttcattcctggaaagccagataatgtccca 404
|||||||||||||||||||||| || || ||| |||||| || |||||||| ||
Sbjct: 102 gttgcccagaagaatcatcacacaaagttcttccagcctggatctccggataatgtgcct 161
Query: 405 ccaggaactgtggtggacaacaaagtctgccatccaaagaacttcgatttctacatgtgt 464
|| || ||||| |||||||||||| |||| ||||| ||| | |||||||||||||||
Sbjct: 162 cctggtactgttgtggacaacaaaatctgtcatccccggaattatgatttctacatgtgt 221
Query: 465 gcgcatgctggaatgatcgggactacgaggccaactcactaccacatcctgcatgatgag 524
|| |||||||||||||| || || | ||||||||||| || || |||| ||||||
Sbjct: 222 gctcatgctggaatgattggtaccagtaggccaactcattatcatgtccttttggatgag 281
Query: 525 ataggcttcagtcctgatgatctgcaggagctggtgcattcgctctcttatgtgtaccaa 584
|| ||||| ||| |||||||| || ||||| ||||| || ||||| ||||| || ||
Sbjct: 282 attggcttttctccagatgatcttcaagagcttgtgcactctctctcctatgtttatcag 341
Query: 585 aggagcacaacagccatatcagtcgttgctcccatctgctacgcacatctggcagctgct 644
||||||| || ||||| || || |||||||| |||||||| || ||| |||| ||| ||
Sbjct: 342 cggagcactactgccatctctgttgttgctccaatctgctatgcccatttggctgcttct 401
Query: 645 caggttggccagttcataaagtt 667
|| || || |||||||| |||||
Sbjct: 402 caagtgggacagttcatgaagtt 424
>gb|CB893980.1|CB893980 EST646772 HOGA Medicago truncatula cDNA clone HOGA-29L17, mRNA
sequence
Length = 794
Score = 125 bits (63), Expect = 8e-027
Identities = 303/383 (79%)
Strand = Plus / Plus
Query: 285 caaatcatcgaggcttgcaaatttcttgatgagaaatggaatcccaagttcacgttgatt 344
|||||||| ||||| || |||||||||||||| || ||||| ||||| || | | |||
Sbjct: 20 caaatcattgaggcctgtaaatttcttgatgaaaagtggaaccccaaatttctggttatt 79
Query: 345 attgcccagaagaatcatcacactaaatttttcattcctggaaagccagataatgtccca 404
|||||||||||||||||||||| || || ||| |||||| || |||||||| ||
Sbjct: 80 gttgcccagaagaatcatcacacaaagttcttccagcctggatctccggataatgtgcct 139
Query: 405 ccaggaactgtggtggacaacaaagtctgccatccaaagaacttcgatttctacatgtgt 464
|| || ||||| |||||||||||| |||| ||||| ||| | |||||||||||||||
Sbjct: 140 cctggtactgttgtggacaacaaaatctgtcatccccggaattatgatttctacatgtgt 199
Query: 465 gcgcatgctggaatgatcgggactacgaggccaactcactaccacatcctgcatgatgag 524
|| |||||||||||||| || || | ||||||||||| || || |||| ||||||
Sbjct: 200 gctcatgctggaatgattggtaccagtaggccaactcattatcatgtccttttggatgag 259
Query: 525 ataggcttcagtcctgatgatctgcaggagctggtgcattcgctctcttatgtgtaccaa 584
|| ||||| ||| |||||||| || ||||| ||||| || ||||| ||||| || ||
Sbjct: 260 attggcttttctccagatgatcttcaagagcttgtgcactctctctcctatgtttatcag 319
Query: 585 aggagcacaacagccatatcagtcgttgctcccatctgctacgcacatctggcagctgct 644
||||||| || ||||| || || |||||||| |||||||| || ||| |||| ||| ||
Sbjct: 320 cggagcactactgccatctctgttgttgctccaatctgctatgcccatttggctgcttct 379
Query: 645 caggttggccagttcataaagtt 667
|| || || |||||||| |||||
Sbjct: 380 caagtgggacagttcatgaagtt 402
>gb|BQ124258.1|BQ124258 EST609834 GLSD Medicago truncatula cDNA clone pGLSD-34D22, mRNA
sequence
Length = 722
Score = 123 bits (62), Expect = 3e-026
Identities = 296/374 (79%)
Strand = Plus / Plus
Query: 294 gaggcttgcaaatttcttgatgagaaatggaatcccaagttcacgttgattattgcccag 353
||||| ||||||||||||||||| || ||||| ||||| || | | ||| ||||||||
Sbjct: 5 gaggcctgcaaatttcttgatgaaaagtggaaccccaaatttctggttattgttgcccag 64
Query: 354 aagaatcatcacactaaatttttcattcctggaaagccagataatgtcccaccaggaact 413
|||||||||||||| || || ||| |||||| || |||||||| || || || |||
Sbjct: 65 aagaatcatcacacaaagttcttccagcctggatctccggataatgtgcctcctggtact 124
Query: 414 gtggtggacaacaaagtctgccatccaaagaacttcgatttctacatgtgtgcgcatgct 473
|| |||||||||||| |||| ||||| ||| | ||||||||||||||||| ||||||
Sbjct: 125 gttgtggacaacaaaatctgtcatccccggaattatgatttctacatgtgtgctcatgct 184
Query: 474 ggaatgatcgggactacgaggccaactcactaccacatcctgcatgatgagataggcttc 533
|||||||| || || | ||||||||||| || || |||| |||||||| |||||
Sbjct: 185 ggaatgattggtaccagtaggccaactcattatcatgtccttttggatgagattggcttt 244
Query: 534 agtcctgatgatctgcaggagctggtgcattcgctctcttatgtgtaccaaaggagcaca 593
||| |||||||| || ||||| ||||| || ||||| ||||| || || |||||||
Sbjct: 245 tctccagatgatcttcaagagcttgtgcactctctctcctatgtttatcagcggagcact 304
Query: 594 acagccatatcagtcgttgctcccatctgctacgcacatctggcagctgctcaggttggc 653
|| ||||| || || |||||||| |||||||| || ||| |||| ||| |||| || ||
Sbjct: 305 actgccatctctgttgttgctccaatctgctatgcccatttggctgcttctcaagtggga 364
Query: 654 cagttcataaagtt 667
|||||||| |||||
Sbjct: 365 cagttcatgaagtt 378
>gb|BG582102.1|BG582102 EST483840 GVN Medicago truncatula cDNA clone pGVN-66P23 5' end,
mRNA sequence
Length = 824
Score = 119 bits (60), Expect = 5e-025
Identities = 304/384 (79%), Gaps = 1/384 (0%)
Strand = Plus / Plus
Query: 285 caaatcatcgaggcttgcaaatttcttgatgagaaatggaatcccaagttcacgttgatt 344
|||||||| ||||| ||||||||||||||||| || ||||| ||||| || | | |||
Sbjct: 288 caaatcattgaggcctgcaaatttcttgatgaaaagtggaaccccaaatttctggttatt 347
Query: 345 attgcccagaagaatcatcacactaaatttttcattcctggaaagccagataatgtccca 404
|||||||||||||||||||||| || || ||| |||||| || |||||||| ||
Sbjct: 348 gttgcccagaagaatcatcacacaaagttcttccagcctggatctccggataatgtgcct 407
Query: 405 ccaggaactgtggtggacaacaaagtctgccatccaaagaacttcgatttctacatgtgt 464
|| || ||||| |||||||||||| |||| ||||| ||| | |||||||||||||||
Sbjct: 408 cctggtactgttgtggacaacaaaatctgtcatccccggaattatgatttctacatgtgt 467
Query: 465 gcgcatgctggaatgatcgggactacgaggccaactcactaccacatcctgcatgatgag 524
|| |||||||||||||| || || | ||||||||||| || || |||| ||||||
Sbjct: 468 gctcatgctggaatgattggtaccagtaggccaactcattatcatgtccttttggatgag 527
Query: 525 ataggcttcagtcctgatgatctgcaggagctggtgcattcgctctcttatgtgtaccaa 584
|| ||||| ||| |||||||| || ||||| ||||| || ||||| ||||| || ||
Sbjct: 528 attggcttttctccagatgatcttcaagagcttgtgcactctctctcctatgtttatcag 587
Query: 585 aggagcac-aacagccatatcagtcgttgctcccatctgctacgcacatctggcagctgc 643
||||||| | | ||||| || || |||||||| |||||||| || ||| |||| ||| |
Sbjct: 588 cggagcactacctgccatctctgttgttgctccaatctgctatgcccatttggctgcttc 647
Query: 644 tcaggttggccagttcataaagtt 667
||| || || |||||||| |||||
Sbjct: 648 tcaagtgggacagttcatgaagtt 671
>gb|BQ124409.1|BQ124409 EST609985 GLSD Medicago truncatula cDNA clone pGLSD-35A4, mRNA
sequence
Length = 622
Score = 113 bits (57), Expect = 3e-023
Identities = 270/341 (79%)
Strand = Plus / Plus
Query: 285 caaatcatcgaggcttgcaaatttcttgatgagaaatggaatcccaagttcacgttgatt 344
|||||||| ||||| ||||||||||||||||| || ||||| ||||| || | | |||
Sbjct: 259 caaatcattgaggcctgcaaatttcttgatgaaaagtggaaccccaaatttctggttatt 318
Query: 345 attgcccagaagaatcatcacactaaatttttcattcctggaaagccagataatgtccca 404
|||||||||||||||||||||| || || ||| |||||| || |||||||| ||
Sbjct: 319 gttgcccagaagaatcatcacacaaagttcttccagcctggatctccggataatgtgcct 378
Query: 405 ccaggaactgtggtggacaacaaagtctgccatccaaagaacttcgatttctacatgtgt 464
|| || ||||| |||||||||||| |||| ||||| ||| | |||||||||||||||
Sbjct: 379 cctggtactgttgtggacaacaaaatctgtcatccccggaattatgatttctacatgtgt 438
Query: 465 gcgcatgctggaatgatcgggactacgaggccaactcactaccacatcctgcatgatgag 524
|| |||||||||||||| || || | ||||||||||| || || |||| ||||||
Sbjct: 439 gctcatgctggaatgattggtaccagtaggccaactcattatcatgtccttttggatgag 498
Query: 525 ataggcttcagtcctgatgatctgcaggagctggtgcattcgctctcttatgtgtaccaa 584
|| ||||| ||| |||||||| || ||||| ||||| || ||||| ||||| || ||
Sbjct: 499 attggcttttctccagatgatcttcaagagcttgtgcactctctctcctatgtttatcag 558
Query: 585 aggagcacaacagccatatcagtcgttgctcccatctgcta 625
||||||| || ||||| || || | |||||| ||||||||
Sbjct: 559 cggagcactactgccatctctgttggtgctccaatctgcta 599
>gb|BG647007.1|BG647007 EST508626 HOGA Medicago truncatula cDNA clone pHOGA-15M6 5' end,
mRNA sequence
Length = 616
Score = 109 bits (55), Expect = 5e-022
Identities = 296/375 (78%), Gaps = 1/375 (0%)
Strand = Plus / Plus
Query: 294 gaggcttgcaaatttcttgatgagaaatggaatcccaagttcacgttgattattgcccag 353
||||| ||||||||||||||||| || ||||| ||||| || | | ||| ||||||||
Sbjct: 2 gaggcctgcaaatttcttgatgaaaagtggaaccccaaatttctggttattgttgcccag 61
Query: 354 aagaa-tcatcacactaaatttttcattcctggaaagccagataatgtcccaccaggaac 412
||||| ||||||||| || || ||| |||||| || |||||||| || || || ||
Sbjct: 62 aagaaatcatcacacaaagttcttccagcctggatctccggataatgtgcctcctggtac 121
Query: 413 tgtggtggacaacaaagtctgccatccaaagaacttcgatttctacatgtgtgcgcatgc 472
||| |||||||||||| |||| ||||| ||| | ||||||||||||||||| |||||
Sbjct: 122 tgttgtggacaacaaaatctgtcatccccggaattatgatttctacatgtgtgctcatgc 181
Query: 473 tggaatgatcgggactacgaggccaactcactaccacatcctgcatgatgagataggctt 532
||||||||| || || | ||||||||||| || || |||| |||||||| |||||
Sbjct: 182 tggaatgattggtaccagtaggccaactcattatcatgtccttttggatgagattggctt 241
Query: 533 cagtcctgatgatctgcaggagctggtgcattcgctctcttatgtgtaccaaaggagcac 592
||| |||||||| || ||||| ||||| || ||||| ||||| || || |||||||
Sbjct: 242 ttctccagatgatcttcaagagcttgtgcactctctctcctatgtttatcagcggagcac 301
Query: 593 aacagccatatcagtcgttgctcccatctgctacgcacatctggcagctgctcaggttgg 652
|| ||||| || || |||||||| |||||||| || ||| |||| ||| |||| || ||
Sbjct: 302 tactgccatctctgttgttgctccaatctgctatgcccatttggctgcttctcaagtggg 361
Query: 653 ccagttcataaagtt 667
|||||||| |||||
Sbjct: 362 acagttcatgaagtt 376
>gb|BI272316.1|BI272316 NF017C11FL1F1085 Developing flower Medicago truncatula cDNA clone
NF017C11FL 5', mRNA sequence
Length = 689
Score = 109 bits (55), Expect = 5e-022
Identities = 269/341 (78%)
Strand = Plus / Plus
Query: 285 caaatcatcgaggcttgcaaatttcttgatgagaaatggaatcccaagttcacgttgatt 344
|||||||| ||||| ||||||||||||||||| || ||||| ||||| || | | |||
Sbjct: 348 caaatcattgaggcctgcaaatttcttgatgaaaagtggaaccccaaatttctggttatt 407
Query: 345 attgcccagaagaatcatcacactaaatttttcattcctggaaagccagataatgtccca 404
|||||||||||||||||||||| || || ||| |||||| || |||||||| ||
Sbjct: 408 gttgcccagaagaatcatcacacaaagttcttccagcctggatctccggataatgtgcct 467
Query: 405 ccaggaactgtggtggacaacaaagtctgccatccaaagaacttcgatttctacatgtgt 464
|| || ||||| |||||||||||| |||| ||||| ||| | |||||||||||||||
Sbjct: 468 cctggtactgttgtggacaacaaaatctgtcatccccggaattatgatttctacatgtgt 527
Query: 465 gcgcatgctggaatgatcgggactacgaggccaactcactaccacatcctgcatgatgag 524
|| |||||||||||||| || || | ||||||||||| || || |||| ||||||
Sbjct: 528 gctcatgctggaatgattggtaccagtaggccaactcattatcatgtccttttggatgag 587
Query: 525 ataggcttcagtcctgatgatctgcaggagctggtgcattcgctctcttatgtgtaccaa 584
|| ||||| ||| ||||||| || ||||| ||||| || ||||| ||||| || ||
Sbjct: 588 attggcttttctccanatgatcttcaagagcttgtgcactctctctcctatgtttatcag 647
Query: 585 aggagcacaacagccatatcagtcgttgctcccatctgcta 625
||||||| || ||||| || || |||||| | ||||||||
Sbjct: 648 cggagcactactgccatctctgttgttgctncaatctgcta 688
>gb|AW329273.2|AW329273 N200493e rootphos(-) Medicago truncatula cDNA clone MHRP-18C1, mRNA
sequence
Length = 588
Score = 107 bits (54), Expect = 2e-021
Identities = 255/322 (79%)
Strand = Plus / Plus
Query: 346 ttgcccagaagaatcatcacactaaatttttcattcctggaaagccagataatgtcccac 405
|||||||||||||||||||||| || || ||| |||||| || |||||||| || |
Sbjct: 45 ttgcccagaagaatcatcacacaaagttcttccagcctggatctccggataatgtgcctc 104
Query: 406 caggaactgtggtggacaacaaagtctgccatccaaagaacttcgatttctacatgtgtg 465
| || ||||| |||||||||||| |||| ||||| ||| | ||||||||||||||||
Sbjct: 105 ctggtactgttgtggacaacaaaatctgtcatccccggaattatgatttctacatgtgtg 164
Query: 466 cgcatgctggaatgatcgggactacgaggccaactcactaccacatcctgcatgatgaga 525
| |||||||||||||| || || | ||||||||||| || || |||| |||||||
Sbjct: 165 ctcatgctggaatgattggtaccagtaggccaactcattatcatgtccttttggatgaga 224
Query: 526 taggcttcagtcctgatgatctgcaggagctggtgcattcgctctcttatgtgtaccaaa 585
| ||||| ||| |||||||| || ||||| ||||| || ||||| ||||| || ||
Sbjct: 225 ttggcttttctccagatgatcttcaagagcttgtgcactctctctcctatgtttatcagc 284
Query: 586 ggagcacaacagccatatcagtcgttgctcccatctgctacgcacatctggcagctgctc 645
||||||| || ||||| || || |||||||| |||||||| || ||| |||| ||| |||
Sbjct: 285 ggagcactactgccatctctgttgttgctccaatctgctatgcccatttggctgcttctc 344
Query: 646 aggttggccagttcataaagtt 667
| || || |||||||| |||||
Sbjct: 345 aagtgggacagttcatgaagtt 366
>gb|BF636246.1|BF636246 NF059A07DT1F1052 Drought Medicago truncatula cDNA clone NF059A07DT
5', mRNA sequence
Length = 683
Score = 107 bits (54), Expect = 2e-021
Identities = 177/218 (81%)
Strand = Plus / Plus
Query: 285 caaatcatcgaggcttgcaaatttcttgatgagaaatggaatcccaagttcacgttgatt 344
|||||||| ||||| ||||||||||||||||| || ||||| ||||| || | | |||
Sbjct: 428 caaatcattgaggcctgcaaatttcttgatgaaaagtggaaccccaaatttctggttatt 487
Query: 345 attgcccagaagaatcatcacactaaatttttcattcctggaaagccagataatgtccca 404
|||||||||||||||||||||| || || ||| |||||| || |||||||| ||
Sbjct: 488 gttgcccagaagaatcatcacacaaagttcttccagcctggatctccggataatgtgcct 547
Query: 405 ccaggaactgtggtggacaacaaagtctgccatccaaagaacttcgatttctacatgtgt 464
|| || ||||| |||||||||||| |||| ||||| ||| | |||||||||||||||
Sbjct: 548 cctggtactgttgtggacaacaaaatctgtcatccccggaattatgatttctacatgtgt 607
Query: 465 gcgcatgctggaatgatcgggactacgaggccaactca 502
|| |||||||||||||| || || | |||||||||||
Sbjct: 608 gctcatgctggaatgattggtaccagtaggccaactca 645
>gb|BE249354.2|BE249354 NF014E10LF1F1082 Developing leaf Medicago truncatula cDNA clone
NF014E10LF 5', mRNA sequence
Length = 646
Score = 107 bits (54), Expect = 2e-021
Identities = 255/322 (79%)
Strand = Plus / Plus
Query: 346 ttgcccagaagaatcatcacactaaatttttcattcctggaaagccagataatgtcccac 405
|||||||||||||||||||||| || || ||| |||||| || |||||||| || |
Sbjct: 8 ttgcccagaagaatcatcacacaaagttcttccagcctggatctccggataatgtgcctc 67
Query: 406 caggaactgtggtggacaacaaagtctgccatccaaagaacttcgatttctacatgtgtg 465
| || ||||| |||||||||||| |||| ||||| ||| | ||||||||||||||||
Sbjct: 68 ctggtactgttgtggacaacaaaatctgtcatccccggaattatgatttctacatgtgtg 127
Query: 466 cgcatgctggaatgatcgggactacgaggccaactcactaccacatcctgcatgatgaga 525
| |||||||||||||| || || | ||||||||||| || || |||| |||||||
Sbjct: 128 ctcatgctggaatgattggtaccagtaggccaactcattatcatgtccttttggatgaga 187
Query: 526 taggcttcagtcctgatgatctgcaggagctggtgcattcgctctcttatgtgtaccaaa 585
| ||||| ||| |||||||| || ||||| ||||| || ||||| ||||| || ||
Sbjct: 188 ttggcttttctccagatgatcttcaagagcttgtgcactctctctcctatgtttatcagc 247
Query: 586 ggagcacaacagccatatcagtcgttgctcccatctgctacgcacatctggcagctgctc 645
||||||| || ||||| || || |||||||| |||||||| || ||| |||| ||| |||
Sbjct: 248 ggagcactactgccatctctgttgttgctccaatctgctatgcccatttggctgcttctc 307
Query: 646 aggttggccagttcataaagtt 667
| || || |||||||| |||||
Sbjct: 308 aagtgggacagttcatgaagtt 329
>gb|CA922986.1|CA922986 EST640704 MTUS Medicago truncatula cDNA clone MTUS-61C12, mRNA
sequence
Length = 786
Score = 107 bits (54), Expect = 2e-021
Identities = 255/322 (79%)
Strand = Plus / Minus
Query: 346 ttgcccagaagaatcatcacactaaatttttcattcctggaaagccagataatgtcccac 405
|||||||||||||||||||||| || || ||| |||||| || |||||||| || |
Sbjct: 754 ttgcccagaagaatcatcacacaaagttcttccagcctggatctccggataatgtgcctc 695
Query: 406 caggaactgtggtggacaacaaagtctgccatccaaagaacttcgatttctacatgtgtg 465
| || ||||| |||||||||||| |||| ||||| ||| | ||||||||||||||||
Sbjct: 694 ctggtactgttgtggacaacaaaatctgtcatccccggaattatgatttctacatgtgtg 635
Query: 466 cgcatgctggaatgatcgggactacgaggccaactcactaccacatcctgcatgatgaga 525
| |||||||||||||| || || | ||||||||||| || || |||| |||||||
Sbjct: 634 ctcatgctggaatgattggtaccagtaggccaactcattatcatgtccttttggatgaga 575
Query: 526 taggcttcagtcctgatgatctgcaggagctggtgcattcgctctcttatgtgtaccaaa 585
| ||||| ||| |||||||| || ||||| ||||| || ||||| ||||| || ||
Sbjct: 574 ttggcttttctccagatgatcttcaagagcttgtgcactctctctcctatgtttatcagc 515
Query: 586 ggagcacaacagccatatcagtcgttgctcccatctgctacgcacatctggcagctgctc 645
||||||| || ||||| || || |||||||| |||||||| || ||| |||| ||| |||
Sbjct: 514 ggagcactactgccatctctgttgttgctccaatctgctatgcccatttggctgcttctc 455
Query: 646 aggttggccagttcataaagtt 667
| || || |||||||| |||||
Sbjct: 454 aagtgggacagttcatgaagtt 433
>gb|BQ750503.1|BQ750503 EST633239 KVKC Medicago truncatula cDNA, mRNA sequence
Length = 783
Score = 93.7 bits (47), Expect = 3e-017
Identities = 218/275 (79%)
Strand = Plus / Minus
Query: 393 gataatgtcccaccaggaactgtggtggacaacaaagtctgccatccaaagaacttcgat 452
|||||||| || || || ||||| |||||||||||| |||| ||||| ||| | |||
Sbjct: 703 gataatgtgcctcctggtactgttgtggacaacaaaatctgtcatccccggaattatgat 644
Query: 453 ttctacatgtgtgcgcatgctggaatgatcgggactacgaggccaactcactaccacatc 512
|||||||||||||| |||||||||||||| || || | ||||||||||| || || ||
Sbjct: 643 ttctacatgtgtgctcatgctggaatgattggtaccagtaggccaactcattatcatgtc 584
Query: 513 ctgcatgatgagataggcttcagtcctgatgatctgcaggagctggtgcattcgctctct 572
|| |||||||| ||||| ||| |||||||| || ||||| ||||| || |||||
Sbjct: 583 cttttggatgagattggcttttctccagatgatcttcaagagcttgtgcactctctctcc 524
Query: 573 tatgtgtaccaaaggagcacaacagccatatcagtcgttgctcccatctgctacgcacat 632
||||| || || ||||||| || ||||| || || |||||||| |||||||| || |||
Sbjct: 523 tatgtttatcagcggagcactactgccatctctgttgttgctccaatctgctatgcccat 464
Query: 633 ctggcagctgctcaggttggccagttcataaagtt 667
|||| ||| |||| || || |||||||| |||||
Sbjct: 463 ttggctgcttctcaagtgggacagttcatgaagtt 429
>gb|AC131455.5| Medicago truncatula clone mth1-42h9, complete sequence
Length = 96063
Score = 85.7 bits (43), Expect = 7e-015
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 295 aggcttgcaaatttcttgatgagaaatggaatcccaagttcacgttgattattgcccaga 354
||||||| |||||||||||||| || ||||| |||||||| | | ||||| |||||||||
Sbjct: 87607 aggcttgtaaatttcttgatgaaaattggaaccccaagtttatggtgattgttgcccaga 87666
Query: 355 agaatcatcacactaaatt 373
||||||||||||| |||||
Sbjct: 87667 agaatcatcacacaaaatt 87685
Score = 63.9 bits (32), Expect = 2e-008
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 406 caggaactgtggtggacaacaaagtctgccatccaaagaacttcgatttctacatgtgtg 465
|||| ||||| |||||||||||| |||| ||||| ||| | ||||||||||||||||
Sbjct: 79689 caggtactgttgtggacaacaaaatctgtcatccccggaattatgatttctacatgtgtg 79748
Query: 466 cgcatgctggaatgat 481
| ||||||||||||||
Sbjct: 79749 ctcatgctggaatgat 79764
Score = 58.0 bits (29), Expect = 2e-006
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 295 aggcttgcaaatttcttgatgagaaatggaatcccaagttcacgttgattattgcccaga 354
|||| ||||||||||||||||| || ||||| ||||| || | | ||| |||||||||
Sbjct: 79482 aggcctgcaaatttcttgatgaaaagtggaaccccaaatttctggttattgttgcccaga 79541
Query: 355 agaatcatcacac 367
|||||||||||||
Sbjct: 79542 agaatcatcacac 79554
Score = 56.0 bits (28), Expect = 6e-006
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 406 caggaactgtggtggacaacaaagtctgccatccaaagaacttcgatttctacatgtgtg 465
|||||||||| ||||||| |||| | |||||||| | ||| | ||||| || |||||||
Sbjct: 87807 caggaactgttgtggacagcaaaatttgccatcctaggaattatgatttttatatgtgtg 87866
Query: 466 cgcatgctggaatgat 481
| ||||||||||||||
Sbjct: 87867 ctcatgctggaatgat 87882
>gb|AC124972.41| Medicago truncatula clone mth2-24j4, complete sequence
Length = 124069
Score = 85.7 bits (43), Expect = 7e-015
Identities = 70/79 (88%)
Strand = Plus / Minus
Query: 295 aggcttgcaaatttcttgatgagaaatggaatcccaagttcacgttgattattgcccaga 354
||||||| |||||||||||||| || ||||| |||||||| | | ||||| |||||||||
Sbjct: 66269 aggcttgtaaatttcttgatgaaaattggaaccccaagtttatggtgattgttgcccaga 66210
Query: 355 agaatcatcacactaaatt 373
||||||||||||| |||||
Sbjct: 66209 agaatcatcacacaaaatt 66191
Score = 63.9 bits (32), Expect = 2e-008
Identities = 65/76 (85%)
Strand = Plus / Minus
Query: 406 caggaactgtggtggacaacaaagtctgccatccaaagaacttcgatttctacatgtgtg 465
|||| ||||| |||||||||||| |||| ||||| ||| | ||||||||||||||||
Sbjct: 74187 caggtactgttgtggacaacaaaatctgtcatccccggaattatgatttctacatgtgtg 74128
Query: 466 cgcatgctggaatgat 481
| ||||||||||||||
Sbjct: 74127 ctcatgctggaatgat 74112
Score = 58.0 bits (29), Expect = 2e-006
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 295 aggcttgcaaatttcttgatgagaaatggaatcccaagttcacgttgattattgcccaga 354
|||| ||||||||||||||||| || ||||| ||||| || | | ||| |||||||||
Sbjct: 74394 aggcctgcaaatttcttgatgaaaagtggaaccccaaatttctggttattgttgcccaga 74335
Query: 355 agaatcatcacac 367
|||||||||||||
Sbjct: 74334 agaatcatcacac 74322
Score = 56.0 bits (28), Expect = 6e-006
Identities = 64/76 (84%)
Strand = Plus / Minus
Query: 406 caggaactgtggtggacaacaaagtctgccatccaaagaacttcgatttctacatgtgtg 465
|||||||||| ||||||| |||| | |||||||| | ||| | ||||| || |||||||
Sbjct: 66069 caggaactgttgtggacagcaaaatttgccatcctaggaattatgatttttatatgtgtg 66010
Query: 466 cgcatgctggaatgat 481
| ||||||||||||||
Sbjct: 66009 ctcatgctggaatgat 65994
>gb|BI309835.1|BI309835 EST5311585 GESD Medicago truncatula cDNA clone pGESD4E4 5' end,
mRNA sequence
Length = 739
Score = 79.8 bits (40), Expect = 4e-013
Identities = 159/196 (81%), Gaps = 2/196 (1%)
Strand = Plus / Plus
Query: 285 caaatcatcgaggcttgcaaatttcttgatgagaaatggaatcccaagttcacgttgatt 344
|||||||| ||||| ||||||||||||||||| || ||||| ||||| || | | |||
Sbjct: 486 caaatcattgaggcctgcaaatttcttgatgaaaagtggaaccccaaatttctggttatt 545
Query: 345 attgcccagaagaatcatcacactaaatttttcattcctggaaagccagataatgtccca 404
|||||||||||||||||||||| || || ||| |||||| || |||||||| ||
Sbjct: 546 gttgcccagaagaatcatcacacaaagttcttccagcctggatctccggataatgtgcct 605
Query: 405 ccagg-aactgtggtggacaacaaagtctgccatccaaagaacttcgatttctacatgtg 463
|| || | |||| |||||||||||| |||| ||||| ||| | ||||||||||||||
Sbjct: 606 cctggtacctgttgtggacaacaaaatctgtcatcc-cggaattatgatttctacatgtg 664
Query: 464 tgcgcatgctggaatg 479
||| ||||||||||||
Sbjct: 665 tgctcatgctggaatg 680
>gb|AJ499890.1|AJ499890 AJ499890 MTGIM Medicago truncatula cDNA clone mtgmacc120009g04,
mRNA sequence
Length = 531
Score = 69.9 bits (35), Expect = 4e-010
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 285 caaatcatcgaggcttgcaaatttcttgatgagaaatggaatcccaagttcacgttgatt 344
|||||||| ||||| ||||||||||||||||| || ||||| ||||| || | | |||
Sbjct: 337 caaatcattgaggcctgcaaatttcttgatgaaaagtggaaccccaaatttctggttatt 278
Query: 345 attgcccagaagaatcatcacac 367
||||||||||||||||||||||
Sbjct: 277 gttgcccagaagaatcatcacac 255
>gb|AQ580105.1|AQ580105 T135662b shotgun sub-library of BAC clone 42H09 Medicago truncatula
genomic clone 42-H-09-C-086, DNA sequence
Length = 447
Score = 63.9 bits (32), Expect = 2e-008
Identities = 65/76 (85%)
Strand = Plus / Minus
Query: 406 caggaactgtggtggacaacaaagtctgccatccaaagaacttcgatttctacatgtgtg 465
|||| ||||| |||||||||||| |||| ||||| ||| | ||||||||||||||||
Sbjct: 373 caggtactgttgtggacaacaaaatctgtcatccccggaattatgatttctacatgtgtg 314
Query: 466 cgcatgctggaatgat 481
| ||||||||||||||
Sbjct: 313 ctcatgctggaatgat 298
>gb|BI271282.1|BI271282 NF053G12FL1F1100 Developing flower Medicago truncatula cDNA clone
NF053G12FL 5', mRNA sequence
Length = 653
Score = 63.9 bits (32), Expect = 2e-008
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 285 caaatcatcgaggcttgcaaatttcttgatgagaaatggaatcccaagttcacgttgatt 344
|||||||| ||||| ||||||||||||||||| || ||||| ||||| || | | |||
Sbjct: 536 caaatcattgaggcctgcaaatttcttgatgaaaagtggaaccccaaatttctggttatt 595
Query: 345 attgcccagaagaatcatcacac 367
||||||| ||||||||||||||
Sbjct: 596 gttgcccanaagaatcatcacac 618
>gb|AQ580029.1|AQ580029 T135582b shotgun sub-library of BAC clone 42H09 Medicago truncatula
genomic clone 42-H-09-C-006, DNA sequence
Length = 523
Score = 56.0 bits (28), Expect = 6e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 450 gatttctacatgtgtgcgcatgctggaatgat 481
||||||||||||||||| ||||||||||||||
Sbjct: 521 gatttctacatgtgtgctcatgctggaatgat 490
>gb|BI311950.1|BI311950 EST5313700 GESD Medicago truncatula cDNA clone pGESD16D7 5' end,
mRNA sequence
Length = 592
Score = 56.0 bits (28), Expect = 6e-006
Identities = 103/128 (80%)
Strand = Plus / Plus
Query: 540 gatgatctgcaggagctggtgcattcgctctcttatgtgtaccaaaggagcacaacagcc 599
|||||| | |||||||| ||||| || || |||||||| || || ||||||| || ||
Sbjct: 129 gatgatttacaggagcttgtgcactctctatcttatgtttatcagcggagcaccactgct 188
Query: 600 atatcagtcgttgctcccatctgctacgcacatctggcagctgctcaggttggccagttc 659
|| || ||||||||||| |||||||| ||||| |||| || |||| ||||| ||||||
Sbjct: 189 atttctgtcgttgctccaatctgctatgcacacttggctgcatctcaagttggacagttc 248
Query: 660 ataaagtt 667
|| |||||
Sbjct: 249 atgaagtt 256
Score = 44.1 bits (22), Expect = 0.023
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 412 ctgtggtggacaacaaagtctgccatccaaagaacttcgatttctacatgtgtgcgcatg 471
|||| ||||||| |||| | |||||||| | ||| | ||||| || |||||||| ||||
Sbjct: 1 ctgttgtggacagcaaaatttgccatcctaggaattatgatttttatatgtgtgctcatg 60
Query: 472 ctggaatgat 481
||||||||||
Sbjct: 61 ctggaatgat 70
>gb|BG450825.1|BG450825 NF093E10DT1F1081 Drought Medicago truncatula cDNA clone NF093E10DT
5', mRNA sequence
Length = 683
Score = 54.0 bits (27), Expect = 2e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 285 caaatcatcgaggcttgcaaatttcttgatgagaaatggaatcccaa 331
|||||||| ||||| ||||||||||||||||| || ||||| |||||
Sbjct: 561 caaatcattgaggcctgcaaatttcttgatgaaaagtggaaccccaa 607
>emb|CT030192.6| M.truncatula DNA sequence from clone MTH2-16D16 on chromosome 3,
complete sequence
Length = 112216
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 330 aagttcacgttgattattgcccagaagaatcatcacacta 369
||||| || |||||| |||| |||||||||||||||||||
Sbjct: 52561 aagtttactttgattgttgctcagaagaatcatcacacta 52600
>gb|CG921028.1|CG921028 MBEBT44TF mth2 Medicago truncatula genomic clone 22H16, DNA
sequence
Length = 796
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 305 atttcttgatgagaaatgga 324
||||||||||||||||||||
Sbjct: 733 atttcttgatgagaaatgga 714
>gb|AL389157.1|AL389157 MtBC53B05F1 MtBC Medicago truncatula cDNA clone MtBC53B05 T3, mRNA
sequence
Length = 498
Score = 40.1 bits (20), Expect = 0.36
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 285 caaatcatcgaggcttgcaaatttcttg 312
|||||||| ||||| |||||||||||||
Sbjct: 471 caaatcattgaggcctgcaaatttcttg 498
>gb|BI309506.1|BI309506 EST530916 GPOD Medicago truncatula cDNA clone pGPOD-13G15 5' end,
mRNA sequence
Length = 737
Score = 40.1 bits (20), Expect = 0.36
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 234 gacggtgttagcgaaagtcagttt 257
|||||||||||||||| |||||||
Sbjct: 670 gacggtgttagcgaaactcagttt 693
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 241,349
Number of Sequences: 392609
Number of extensions: 241349
Number of successful extensions: 17738
Number of sequences better than 0.5: 27
Number of HSP's better than 0.5 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17630
Number of HSP's gapped (non-prelim): 63
length of query: 1028
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1008
effective length of database: 433,880,813
effective search space: 437351859504
effective search space used: 437351859504
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)