BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404801.2.1
(867 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG582103.1|BG582103 EST483841 GVN Medicago truncatula cD... 103 2e-020
gb|AW329273.2|AW329273 N200493e rootphos(-) Medicago trunca... 101 1e-019
gb|AL374004.1|AL374004 MtBB04B02F1 MtBB Medicago truncatula... 101 1e-019
gb|BE249354.2|BE249354 NF014E10LF1F1082 Developing leaf Med... 101 1e-019
gb|BI266886.1|BI266886 NF094H07IN1F1064 Insect herbivory Me... 101 1e-019
gb|BQ124258.1|BQ124258 EST609834 GLSD Medicago truncatula c... 101 1e-019
gb|CB893980.1|CB893980 EST646772 HOGA Medicago truncatula c... 101 1e-019
gb|CA922986.1|CA922986 EST640704 MTUS Medicago truncatula c... 101 1e-019
gb|BG647007.1|BG647007 EST508626 HOGA Medicago truncatula c... 100 4e-019
gb|BQ750503.1|BQ750503 EST633239 KVKC Medicago truncatula c... 100 4e-019
gb|BQ124409.1|BQ124409 EST609985 GLSD Medicago truncatula c... 92 9e-017
gb|BG582102.1|BG582102 EST483840 GVN Medicago truncatula cD... 90 4e-016
gb|BF636246.1|BF636246 NF059A07DT1F1052 Drought Medicago tr... 86 6e-015
gb|BI272316.1|BI272316 NF017C11FL1F1085 Developing flower M... 86 6e-015
gb|AQ580105.1|AQ580105 T135662b shotgun sub-library of BAC ... 74 2e-011
gb|AC131455.5| Medicago truncatula clone mth1-42h9, complet... 74 2e-011
gb|AC124972.41| Medicago truncatula clone mth2-24j4, comple... 74 2e-011
gb|BI309835.1|BI309835 EST5311585 GESD Medicago truncatula ... 60 3e-007
gb|AQ580029.1|AQ580029 T135582b shotgun sub-library of BAC ... 52 8e-005
gb|AW736122.1|AW736122 EST332108 KV3 Medicago truncatula cD... 50 3e-004
gb|AL374005.1|AL374005 MtBB04B02R1 MtBB Medicago truncatula... 50 3e-004
gb|BI310785.1|BI310785 EST5312535 GESD Medicago truncatula ... 50 3e-004
gb|CX541282.1|CX541282 s13dNF72A10GS081_465860 Germinating ... 50 3e-004
gb|AL389158.1|AL389158 MtBC53B05R1 MtBC Medicago truncatula... 46 0.005
gb|BF003223.1|BF003223 EST431771 KV1 Medicago truncatula cD... 46 0.005
gb|BF640885.1|BF640885 NF050D12IN1F1101 Insect herbivory Me... 46 0.005
gb|CX542164.1|CX542164 s13dNF86A08GS055_467636 Germinating ... 46 0.005
gb|BI311950.1|BI311950 EST5313700 GESD Medicago truncatula ... 44 0.019
>gb|BG582103.1|BG582103 EST483841 GVN Medicago truncatula cDNA clone pGVN-66B2 5' end, mRNA
sequence
Length = 830
Score = 103 bits (52), Expect = 2e-020
Identities = 280/356 (78%)
Strand = Plus / Plus
Query: 140 ttgcccagaagaatcaccacactaaatttttcattcctggaaagccagataatgttccag 199
|||||||||||||||| ||||| || || ||| |||||| || |||||||| ||
Sbjct: 348 ttgcccagaagaatcatcacacaaagttcttccagcctggatctccggataatgtgcctc 407
Query: 200 ccggcactgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgtt 259
| || |||||||| ||||||||| |||||||||| |||| | |||||||||||||||
Sbjct: 408 ctggtactgttgtggacaacaaaatctgtcatccccggaattatgatttctacatgtgtg 467
Query: 260 cacatgctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgaga 319
| ||||||||||||||||| || | ||||||||||| ||||| |||| || ||||
Sbjct: 468 ctcatgctggaatgattggtaccagtaggccaactcattatcatgtccttttggatgaga 527
Query: 320 taggcttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaa 379
| ||||| ||| ||||| || || ||||| |||||||| ||||| || || || ||
Sbjct: 528 ttggcttttctccagatgatcttcaagagcttgtgcactctctctcctatgtttatcagc 587
Query: 380 ggagcacaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgccc 439
||||||| || ||||| || ||||||||||| |||||||| ||||| | || || | |
Sbjct: 588 ggagcactactgccatctctgttgttgctccaatctgctatgcccatttggctgcttctc 647
Query: 440 aggttgggcagttcataaagttcgacgagatgtcggagacttcatctagccatggg 495
| || || |||||||| ||||| || || | ||| || ||||||||||||||||||
Sbjct: 648 aagtgggacagttcatgaagtttgaagacaagtctgaaacttcatctagccatggg 703
>gb|AW329273.2|AW329273 N200493e rootphos(-) Medicago truncatula cDNA clone MHRP-18C1, mRNA
sequence
Length = 588
Score = 101 bits (51), Expect = 1e-019
Identities = 279/355 (78%)
Strand = Plus / Plus
Query: 140 ttgcccagaagaatcaccacactaaatttttcattcctggaaagccagataatgttccag 199
|||||||||||||||| ||||| || || ||| |||||| || |||||||| ||
Sbjct: 45 ttgcccagaagaatcatcacacaaagttcttccagcctggatctccggataatgtgcctc 104
Query: 200 ccggcactgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgtt 259
| || |||||||| ||||||||| |||||||||| |||| | |||||||||||||||
Sbjct: 105 ctggtactgttgtggacaacaaaatctgtcatccccggaattatgatttctacatgtgtg 164
Query: 260 cacatgctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgaga 319
| ||||||||||||||||| || | ||||||||||| ||||| |||| || ||||
Sbjct: 165 ctcatgctggaatgattggtaccagtaggccaactcattatcatgtccttttggatgaga 224
Query: 320 taggcttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaa 379
| ||||| ||| ||||| || || ||||| |||||||| ||||| || || || ||
Sbjct: 225 ttggcttttctccagatgatcttcaagagcttgtgcactctctctcctatgtttatcagc 284
Query: 380 ggagcacaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgccc 439
||||||| || ||||| || ||||||||||| |||||||| ||||| | || || | |
Sbjct: 285 ggagcactactgccatctctgttgttgctccaatctgctatgcccatttggctgcttctc 344
Query: 440 aggttgggcagttcataaagttcgacgagatgtcggagacttcatctagccatgg 494
| || || |||||||| ||||| || || | ||| || |||||||||||||||||
Sbjct: 345 aagtgggacagttcatgaagtttgaagacaagtctgaaacttcatctagccatgg 399
>gb|AL374004.1|AL374004 MtBB04B02F1 MtBB Medicago truncatula cDNA clone MtBB04B02 T3, mRNA
sequence
Length = 492
Score = 101 bits (51), Expect = 1e-019
Identities = 279/355 (78%)
Strand = Plus / Plus
Query: 140 ttgcccagaagaatcaccacactaaatttttcattcctggaaagccagataatgttccag 199
|||||||||||||||| ||||| || || ||| |||||| || |||||||| ||
Sbjct: 86 ttgcccagaagaatcatcacacaaagttcttccagcctggatctccggataatgtgcctc 145
Query: 200 ccggcactgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgtt 259
| || |||||||| ||||||||| |||||||||| |||| | |||||||||||||||
Sbjct: 146 ctggtactgttgtggacaacaaaatctgtcatccccggaattatgatttctacatgtgtg 205
Query: 260 cacatgctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgaga 319
| ||||||||||||||||| || | ||||||||||| ||||| |||| || ||||
Sbjct: 206 ctcatgctggaatgattggtaccagtaggccaactcattatcatgtccttttggatgaga 265
Query: 320 taggcttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaa 379
| ||||| ||| ||||| || || ||||| |||||||| ||||| || || || ||
Sbjct: 266 ttggcttttctccagatgatcttcaagagcttgtgcactctctctcctatgtttatcagc 325
Query: 380 ggagcacaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgccc 439
||||||| || ||||| || ||||||||||| |||||||| ||||| | || || | |
Sbjct: 326 ggagcactactgccatctctgttgttgctccaatctgctatgcccatttggctgcttctc 385
Query: 440 aggttgggcagttcataaagttcgacgagatgtcggagacttcatctagccatgg 494
| || || |||||||| ||||| || || | ||| || |||||||||||||||||
Sbjct: 386 aagtgggacagttcatgaagtttgaagacaagtctgaaacttcatctagccatgg 440
>gb|BE249354.2|BE249354 NF014E10LF1F1082 Developing leaf Medicago truncatula cDNA clone
NF014E10LF 5', mRNA sequence
Length = 646
Score = 101 bits (51), Expect = 1e-019
Identities = 279/355 (78%)
Strand = Plus / Plus
Query: 140 ttgcccagaagaatcaccacactaaatttttcattcctggaaagccagataatgttccag 199
|||||||||||||||| ||||| || || ||| |||||| || |||||||| ||
Sbjct: 8 ttgcccagaagaatcatcacacaaagttcttccagcctggatctccggataatgtgcctc 67
Query: 200 ccggcactgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgtt 259
| || |||||||| ||||||||| |||||||||| |||| | |||||||||||||||
Sbjct: 68 ctggtactgttgtggacaacaaaatctgtcatccccggaattatgatttctacatgtgtg 127
Query: 260 cacatgctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgaga 319
| ||||||||||||||||| || | ||||||||||| ||||| |||| || ||||
Sbjct: 128 ctcatgctggaatgattggtaccagtaggccaactcattatcatgtccttttggatgaga 187
Query: 320 taggcttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaa 379
| ||||| ||| ||||| || || ||||| |||||||| ||||| || || || ||
Sbjct: 188 ttggcttttctccagatgatcttcaagagcttgtgcactctctctcctatgtttatcagc 247
Query: 380 ggagcacaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgccc 439
||||||| || ||||| || ||||||||||| |||||||| ||||| | || || | |
Sbjct: 248 ggagcactactgccatctctgttgttgctccaatctgctatgcccatttggctgcttctc 307
Query: 440 aggttgggcagttcataaagttcgacgagatgtcggagacttcatctagccatgg 494
| || || |||||||| ||||| || || | ||| || |||||||||||||||||
Sbjct: 308 aagtgggacagttcatgaagtttgaagacaagtctgaaacttcatctagccatgg 362
>gb|BI266886.1|BI266886 NF094H07IN1F1064 Insect herbivory Medicago truncatula cDNA clone
NF094H07IN 5', mRNA sequence
Length = 642
Score = 101 bits (51), Expect = 1e-019
Identities = 279/355 (78%)
Strand = Plus / Plus
Query: 140 ttgcccagaagaatcaccacactaaatttttcattcctggaaagccagataatgttccag 199
|||||||||||||||| ||||| || || ||| |||||| || |||||||| ||
Sbjct: 103 ttgcccagaagaatcatcacacaaagttcttccagcctggatctccggataatgtgcctc 162
Query: 200 ccggcactgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgtt 259
| || |||||||| ||||||||| |||||||||| |||| | |||||||||||||||
Sbjct: 163 ctggtactgttgtggacaacaaaatctgtcatccccggaattatgatttctacatgtgtg 222
Query: 260 cacatgctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgaga 319
| ||||||||||||||||| || | ||||||||||| ||||| |||| || ||||
Sbjct: 223 ctcatgctggaatgattggtaccagtaggccaactcattatcatgtccttttggatgaga 282
Query: 320 taggcttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaa 379
| ||||| ||| ||||| || || ||||| |||||||| ||||| || || || ||
Sbjct: 283 ttggcttttctccagatgatcttcaagagcttgtgcactctctctcctatgtttatcagc 342
Query: 380 ggagcacaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgccc 439
||||||| || ||||| || ||||||||||| |||||||| ||||| | || || | |
Sbjct: 343 ggagcactactgccatctctgttgttgctccaatctgctatgcccatttggctgcttctc 402
Query: 440 aggttgggcagttcataaagttcgacgagatgtcggagacttcatctagccatgg 494
| || || |||||||| ||||| || || | ||| || |||||||||||||||||
Sbjct: 403 aagtgggacagttcatgaagtttgaagacaagtctgaaacttcatctagccatgg 457
>gb|BQ124258.1|BQ124258 EST609834 GLSD Medicago truncatula cDNA clone pGLSD-34D22, mRNA
sequence
Length = 722
Score = 101 bits (51), Expect = 1e-019
Identities = 279/355 (78%)
Strand = Plus / Plus
Query: 140 ttgcccagaagaatcaccacactaaatttttcattcctggaaagccagataatgttccag 199
|||||||||||||||| ||||| || || ||| |||||| || |||||||| ||
Sbjct: 57 ttgcccagaagaatcatcacacaaagttcttccagcctggatctccggataatgtgcctc 116
Query: 200 ccggcactgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgtt 259
| || |||||||| ||||||||| |||||||||| |||| | |||||||||||||||
Sbjct: 117 ctggtactgttgtggacaacaaaatctgtcatccccggaattatgatttctacatgtgtg 176
Query: 260 cacatgctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgaga 319
| ||||||||||||||||| || | ||||||||||| ||||| |||| || ||||
Sbjct: 177 ctcatgctggaatgattggtaccagtaggccaactcattatcatgtccttttggatgaga 236
Query: 320 taggcttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaa 379
| ||||| ||| ||||| || || ||||| |||||||| ||||| || || || ||
Sbjct: 237 ttggcttttctccagatgatcttcaagagcttgtgcactctctctcctatgtttatcagc 296
Query: 380 ggagcacaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgccc 439
||||||| || ||||| || ||||||||||| |||||||| ||||| | || || | |
Sbjct: 297 ggagcactactgccatctctgttgttgctccaatctgctatgcccatttggctgcttctc 356
Query: 440 aggttgggcagttcataaagttcgacgagatgtcggagacttcatctagccatgg 494
| || || |||||||| ||||| || || | ||| || |||||||||||||||||
Sbjct: 357 aagtgggacagttcatgaagtttgaagacaagtctgaaacttcatctagccatgg 411
>gb|CB893980.1|CB893980 EST646772 HOGA Medicago truncatula cDNA clone HOGA-29L17, mRNA
sequence
Length = 794
Score = 101 bits (51), Expect = 1e-019
Identities = 279/355 (78%)
Strand = Plus / Plus
Query: 140 ttgcccagaagaatcaccacactaaatttttcattcctggaaagccagataatgttccag 199
|||||||||||||||| ||||| || || ||| |||||| || |||||||| ||
Sbjct: 81 ttgcccagaagaatcatcacacaaagttcttccagcctggatctccggataatgtgcctc 140
Query: 200 ccggcactgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgtt 259
| || |||||||| ||||||||| |||||||||| |||| | |||||||||||||||
Sbjct: 141 ctggtactgttgtggacaacaaaatctgtcatccccggaattatgatttctacatgtgtg 200
Query: 260 cacatgctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgaga 319
| ||||||||||||||||| || | ||||||||||| ||||| |||| || ||||
Sbjct: 201 ctcatgctggaatgattggtaccagtaggccaactcattatcatgtccttttggatgaga 260
Query: 320 taggcttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaa 379
| ||||| ||| ||||| || || ||||| |||||||| ||||| || || || ||
Sbjct: 261 ttggcttttctccagatgatcttcaagagcttgtgcactctctctcctatgtttatcagc 320
Query: 380 ggagcacaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgccc 439
||||||| || ||||| || ||||||||||| |||||||| ||||| | || || | |
Sbjct: 321 ggagcactactgccatctctgttgttgctccaatctgctatgcccatttggctgcttctc 380
Query: 440 aggttgggcagttcataaagttcgacgagatgtcggagacttcatctagccatgg 494
| || || |||||||| ||||| || || | ||| || |||||||||||||||||
Sbjct: 381 aagtgggacagttcatgaagtttgaagacaagtctgaaacttcatctagccatgg 435
>gb|CA922986.1|CA922986 EST640704 MTUS Medicago truncatula cDNA clone MTUS-61C12, mRNA
sequence
Length = 786
Score = 101 bits (51), Expect = 1e-019
Identities = 279/355 (78%)
Strand = Plus / Minus
Query: 140 ttgcccagaagaatcaccacactaaatttttcattcctggaaagccagataatgttccag 199
|||||||||||||||| ||||| || || ||| |||||| || |||||||| ||
Sbjct: 754 ttgcccagaagaatcatcacacaaagttcttccagcctggatctccggataatgtgcctc 695
Query: 200 ccggcactgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgtt 259
| || |||||||| ||||||||| |||||||||| |||| | |||||||||||||||
Sbjct: 694 ctggtactgttgtggacaacaaaatctgtcatccccggaattatgatttctacatgtgtg 635
Query: 260 cacatgctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgaga 319
| ||||||||||||||||| || | ||||||||||| ||||| |||| || ||||
Sbjct: 634 ctcatgctggaatgattggtaccagtaggccaactcattatcatgtccttttggatgaga 575
Query: 320 taggcttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaa 379
| ||||| ||| ||||| || || ||||| |||||||| ||||| || || || ||
Sbjct: 574 ttggcttttctccagatgatcttcaagagcttgtgcactctctctcctatgtttatcagc 515
Query: 380 ggagcacaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgccc 439
||||||| || ||||| || ||||||||||| |||||||| ||||| | || || | |
Sbjct: 514 ggagcactactgccatctctgttgttgctccaatctgctatgcccatttggctgcttctc 455
Query: 440 aggttgggcagttcataaagttcgacgagatgtcggagacttcatctagccatgg 494
| || || |||||||| ||||| || || | ||| || |||||||||||||||||
Sbjct: 454 aagtgggacagttcatgaagtttgaagacaagtctgaaacttcatctagccatgg 400
>gb|BG647007.1|BG647007 EST508626 HOGA Medicago truncatula cDNA clone pHOGA-15M6 5' end,
mRNA sequence
Length = 616
Score = 99.6 bits (50), Expect = 4e-019
Identities = 230/290 (79%)
Strand = Plus / Plus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||||| ||||||||| |||||||||| |||| | ||||||||||||||| | |||
Sbjct: 120 actgttgtggacaacaaaatctgtcatccccggaattatgatttctacatgtgtgctcat 179
Query: 265 gctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgagataggc 324
|||||||||||||| || | ||||||||||| ||||| |||| || ||||| |||
Sbjct: 180 gctggaatgattggtaccagtaggccaactcattatcatgtccttttggatgagattggc 239
Query: 325 ttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaaggagc 384
|| ||| ||||| || || ||||| |||||||| ||||| || || || || |||||
Sbjct: 240 ttttctccagatgatcttcaagagcttgtgcactctctctcctatgtttatcagcggagc 299
Query: 385 acaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgcccaggtt 444
|| || ||||| || ||||||||||| |||||||| ||||| | || || | || ||
Sbjct: 300 actactgccatctctgttgttgctccaatctgctatgcccatttggctgcttctcaagtg 359
Query: 445 gggcagttcataaagttcgacgagatgtcggagacttcatctagccatgg 494
|| |||||||| ||||| || || | ||| || |||||||||||||||||
Sbjct: 360 ggacagttcatgaagtttgaagacaagtctgaaacttcatctagccatgg 409
>gb|BQ750503.1|BQ750503 EST633239 KVKC Medicago truncatula cDNA, mRNA sequence
Length = 783
Score = 99.6 bits (50), Expect = 4e-019
Identities = 230/290 (79%)
Strand = Plus / Minus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||||| ||||||||| |||||||||| |||| | ||||||||||||||| | |||
Sbjct: 685 actgttgtggacaacaaaatctgtcatccccggaattatgatttctacatgtgtgctcat 626
Query: 265 gctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgagataggc 324
|||||||||||||| || | ||||||||||| ||||| |||| || ||||| |||
Sbjct: 625 gctggaatgattggtaccagtaggccaactcattatcatgtccttttggatgagattggc 566
Query: 325 ttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaaggagc 384
|| ||| ||||| || || ||||| |||||||| ||||| || || || || |||||
Sbjct: 565 ttttctccagatgatcttcaagagcttgtgcactctctctcctatgtttatcagcggagc 506
Query: 385 acaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgcccaggtt 444
|| || ||||| || ||||||||||| |||||||| ||||| | || || | || ||
Sbjct: 505 actactgccatctctgttgttgctccaatctgctatgcccatttggctgcttctcaagtg 446
Query: 445 gggcagttcataaagttcgacgagatgtcggagacttcatctagccatgg 494
|| |||||||| ||||| || || | ||| || |||||||||||||||||
Sbjct: 445 ggacagttcatgaagtttgaagacaagtctgaaacttcatctagccatgg 396
>gb|BQ124409.1|BQ124409 EST609985 GLSD Medicago truncatula cDNA clone pGLSD-35A4, mRNA
sequence
Length = 622
Score = 91.7 bits (46), Expect = 9e-017
Identities = 226/286 (79%)
Strand = Plus / Plus
Query: 140 ttgcccagaagaatcaccacactaaatttttcattcctggaaagccagataatgttccag 199
|||||||||||||||| ||||| || || ||| |||||| || |||||||| ||
Sbjct: 320 ttgcccagaagaatcatcacacaaagttcttccagcctggatctccggataatgtgcctc 379
Query: 200 ccggcactgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgtt 259
| || |||||||| ||||||||| |||||||||| |||| | |||||||||||||||
Sbjct: 380 ctggtactgttgtggacaacaaaatctgtcatccccggaattatgatttctacatgtgtg 439
Query: 260 cacatgctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgaga 319
| ||||||||||||||||| || | ||||||||||| ||||| |||| || ||||
Sbjct: 440 ctcatgctggaatgattggtaccagtaggccaactcattatcatgtccttttggatgaga 499
Query: 320 taggcttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaa 379
| ||||| ||| ||||| || || ||||| |||||||| ||||| || || || ||
Sbjct: 500 ttggcttttctccagatgatcttcaagagcttgtgcactctctctcctatgtttatcagc 559
Query: 380 ggagcacaacagccatatcagttgttgctcccatctgctacgccca 425
||||||| || ||||| || |||| |||||| |||||||| |||||
Sbjct: 560 ggagcactactgccatctctgttggtgctccaatctgctatgccca 605
>gb|BG582102.1|BG582102 EST483840 GVN Medicago truncatula cDNA clone pGVN-66P23 5' end,
mRNA sequence
Length = 824
Score = 89.7 bits (45), Expect = 4e-016
Identities = 280/357 (78%), Gaps = 1/357 (0%)
Strand = Plus / Plus
Query: 140 ttgcccagaagaatcaccacactaaatttttcattcctggaaagccagataatgttccag 199
|||||||||||||||| ||||| || || ||| |||||| || |||||||| ||
Sbjct: 349 ttgcccagaagaatcatcacacaaagttcttccagcctggatctccggataatgtgcctc 408
Query: 200 ccggcactgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgtt 259
| || |||||||| ||||||||| |||||||||| |||| | |||||||||||||||
Sbjct: 409 ctggtactgttgtggacaacaaaatctgtcatccccggaattatgatttctacatgtgtg 468
Query: 260 cacatgctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgaga 319
| ||||||||||||||||| || | ||||||||||| ||||| |||| || ||||
Sbjct: 469 ctcatgctggaatgattggtaccagtaggccaactcattatcatgtccttttggatgaga 528
Query: 320 taggcttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaa 379
| ||||| ||| ||||| || || ||||| |||||||| ||||| || || || ||
Sbjct: 529 ttggcttttctccagatgatcttcaagagcttgtgcactctctctcctatgtttatcagc 588
Query: 380 ggagcac-aacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgcc 438
||||||| | | ||||| || ||||||||||| |||||||| ||||| | || || |
Sbjct: 589 ggagcactacctgccatctctgttgttgctccaatctgctatgcccatttggctgcttct 648
Query: 439 caggttgggcagttcataaagttcgacgagatgtcggagacttcatctagccatggg 495
|| || || |||||||| ||||| || || | ||| || ||||||||||||||||||
Sbjct: 649 caagtgggacagttcatgaagtttgaagacaagtctgaaacttcatctagccatggg 705
>gb|BF636246.1|BF636246 NF059A07DT1F1052 Drought Medicago truncatula cDNA clone NF059A07DT
5', mRNA sequence
Length = 683
Score = 85.7 bits (43), Expect = 6e-015
Identities = 133/163 (81%)
Strand = Plus / Plus
Query: 140 ttgcccagaagaatcaccacactaaatttttcattcctggaaagccagataatgttccag 199
|||||||||||||||| ||||| || || ||| |||||| || |||||||| ||
Sbjct: 489 ttgcccagaagaatcatcacacaaagttcttccagcctggatctccggataatgtgcctc 548
Query: 200 ccggcactgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgtt 259
| || |||||||| ||||||||| |||||||||| |||| | |||||||||||||||
Sbjct: 549 ctggtactgttgtggacaacaaaatctgtcatccccggaattatgatttctacatgtgtg 608
Query: 260 cacatgctggaatgattgggactaccaggccaactcactatca 302
| ||||||||||||||||| || | ||||||||||| |||||
Sbjct: 609 ctcatgctggaatgattggtaccagtaggccaactcattatca 651
>gb|BI272316.1|BI272316 NF017C11FL1F1085 Developing flower Medicago truncatula cDNA clone
NF017C11FL 5', mRNA sequence
Length = 689
Score = 85.7 bits (43), Expect = 6e-015
Identities = 133/163 (81%)
Strand = Plus / Plus
Query: 140 ttgcccagaagaatcaccacactaaatttttcattcctggaaagccagataatgttccag 199
|||||||||||||||| ||||| || || ||| |||||| || |||||||| ||
Sbjct: 409 ttgcccagaagaatcatcacacaaagttcttccagcctggatctccggataatgtgcctc 468
Query: 200 ccggcactgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgtt 259
| || |||||||| ||||||||| |||||||||| |||| | |||||||||||||||
Sbjct: 469 ctggtactgttgtggacaacaaaatctgtcatccccggaattatgatttctacatgtgtg 528
Query: 260 cacatgctggaatgattgggactaccaggccaactcactatca 302
| ||||||||||||||||| || | ||||||||||| |||||
Sbjct: 529 ctcatgctggaatgattggtaccagtaggccaactcattatca 571
>gb|AQ580105.1|AQ580105 T135662b shotgun sub-library of BAC clone 42H09 Medicago truncatula
genomic clone 42-H-09-C-086, DNA sequence
Length = 447
Score = 73.8 bits (37), Expect = 2e-011
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||||| ||||||||| |||||||||| |||| | ||||||||||||||| | |||
Sbjct: 368 actgttgtggacaacaaaatctgtcatccccggaattatgatttctacatgtgtgctcat 309
Query: 265 gctggaatgattg 277
|||||||||||||
Sbjct: 308 gctggaatgattg 296
>gb|AC131455.5| Medicago truncatula clone mth1-42h9, complete sequence
Length = 96063
Score = 73.8 bits (37), Expect = 2e-011
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||||| ||||||||| |||||||||| |||| | ||||||||||||||| | |||
Sbjct: 79694 actgttgtggacaacaaaatctgtcatccccggaattatgatttctacatgtgtgctcat 79753
Query: 265 gctggaatgattg 277
|||||||||||||
Sbjct: 79754 gctggaatgattg 79766
Score = 42.1 bits (21), Expect = 0.077
Identities = 60/73 (82%)
Strand = Plus / Plus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||||| |||| |||| | || ||||| ||||| | ||||| || |||||| | |||
Sbjct: 87812 actgttgtggacagcaaaatttgccatcctaggaattatgatttttatatgtgtgctcat 87871
Query: 265 gctggaatgattg 277
|||||||||||||
Sbjct: 87872 gctggaatgattg 87884
Score = 40.1 bits (20), Expect = 0.30
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 140 ttgcccagaagaatcaccacactaaatt 167
|||||||||||||||| ||||| |||||
Sbjct: 87658 ttgcccagaagaatcatcacacaaaatt 87685
>gb|AC124972.41| Medicago truncatula clone mth2-24j4, complete sequence
Length = 124069
Score = 73.8 bits (37), Expect = 2e-011
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||||| ||||||||| |||||||||| |||| | ||||||||||||||| | |||
Sbjct: 74182 actgttgtggacaacaaaatctgtcatccccggaattatgatttctacatgtgtgctcat 74123
Query: 265 gctggaatgattg 277
|||||||||||||
Sbjct: 74122 gctggaatgattg 74110
Score = 42.1 bits (21), Expect = 0.077
Identities = 60/73 (82%)
Strand = Plus / Minus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||||| |||| |||| | || ||||| ||||| | ||||| || |||||| | |||
Sbjct: 66064 actgttgtggacagcaaaatttgccatcctaggaattatgatttttatatgtgtgctcat 66005
Query: 265 gctggaatgattg 277
|||||||||||||
Sbjct: 66004 gctggaatgattg 65992
Score = 40.1 bits (20), Expect = 0.30
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 140 ttgcccagaagaatcaccacactaaatt 167
|||||||||||||||| ||||| |||||
Sbjct: 66218 ttgcccagaagaatcatcacacaaaatt 66191
>gb|BI309835.1|BI309835 EST5311585 GESD Medicago truncatula cDNA clone pGESD4E4 5' end,
mRNA sequence
Length = 739
Score = 60.0 bits (30), Expect = 3e-007
Identities = 83/98 (84%), Gaps = 2/98 (2%)
Strand = Plus / Plus
Query: 206 ctgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacatg 265
||||||| ||||||||| |||||||||| |||| | ||||||||||||||| | ||||
Sbjct: 614 ctgttgtggacaacaaaatctgtcatccc-ggaattatgatttctacatgtgtgctcatg 672
Query: 266 ctggaat-gattgggactaccaggccaactcactatca 302
||||||| |||||| || | ||||||||||| |||||
Sbjct: 673 ctggaatggattggtaccagtaggccaactcattatca 710
>gb|AQ580029.1|AQ580029 T135582b shotgun sub-library of BAC clone 42H09 Medicago truncatula
genomic clone 42-H-09-C-006, DNA sequence
Length = 523
Score = 52.0 bits (26), Expect = 8e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 244 gatttctacatgtgttcacatgctggaatgattg 277
||||||||||||||| | ||||||||||||||||
Sbjct: 521 gatttctacatgtgtgctcatgctggaatgattg 488
>gb|AW736122.1|AW736122 EST332108 KV3 Medicago truncatula cDNA clone pKV3-5L19, mRNA
sequence
Length = 554
Score = 50.1 bits (25), Expect = 3e-004
Identities = 118/149 (79%)
Strand = Plus / Minus
Query: 346 gagctggtgcactcgctctcttacgtgtaccaaaggagcacaacagccatatcagttgtt 405
||||| |||||||| ||||| || || || || ||||||| || ||||| || ||||||
Sbjct: 500 gagcttgtgcactctctctcctatgtttatcagcggagcactactgccatctctgttgtt 441
Query: 406 gctcccatctgctacgcccaccttgcagccgcccaggttgggcagttcataaagttcgac 465
||||| |||||||| ||||| | || || | || || || |||||||| ||||| ||
Sbjct: 440 gctccaatctgctatgcccatttggctgcttctcaagtgggacagttcatgaagtttgaa 381
Query: 466 gagatgtcggagacttcatctagccatgg 494
|| | ||| || |||||||||||||||||
Sbjct: 380 gacaagtctgaaacttcatctagccatgg 352
>gb|AL374005.1|AL374005 MtBB04B02R1 MtBB Medicago truncatula cDNA clone MtBB04B02 T7, mRNA
sequence
Length = 552
Score = 50.1 bits (25), Expect = 3e-004
Identities = 118/149 (79%)
Strand = Plus / Plus
Query: 346 gagctggtgcactcgctctcttacgtgtaccaaaggagcacaacagccatatcagttgtt 405
||||| |||||||| ||||| || || || || ||||||| || ||||| || ||||||
Sbjct: 80 gagcttgtgcactctctctcctatgtttatcagcggagcactactgccatctctgttgtt 139
Query: 406 gctcccatctgctacgcccaccttgcagccgcccaggttgggcagttcataaagttcgac 465
||||| |||||||| ||||| | || || | || || || |||||||| ||||| ||
Sbjct: 140 gctccaatctgctatgcccatttggctgcttctcaagtgggacagttcatgaagtttgaa 199
Query: 466 gagatgtcggagacttcatctagccatgg 494
|| | ||| || |||||||||||||||||
Sbjct: 200 gacaagtctgaaacttcatctagccatgg 228
>gb|BI310785.1|BI310785 EST5312535 GESD Medicago truncatula cDNA clone pGESD9E11 5' end,
mRNA sequence
Length = 619
Score = 50.1 bits (25), Expect = 3e-004
Identities = 118/149 (79%)
Strand = Plus / Plus
Query: 346 gagctggtgcactcgctctcttacgtgtaccaaaggagcacaacagccatatcagttgtt 405
||||| |||||||| ||||| || || || || ||||||| || ||||| || ||||||
Sbjct: 66 gagcttgtgcactctctctcctatgtttatcagcggagcactactgccatctctgttgtt 125
Query: 406 gctcccatctgctacgcccaccttgcagccgcccaggttgggcagttcataaagttcgac 465
||||| |||||||| ||||| | || || | || || || |||||||| ||||| ||
Sbjct: 126 gctccaatctgctatgcccatttggctgcttctcaagtgggacagttcatgaagtttgaa 185
Query: 466 gagatgtcggagacttcatctagccatgg 494
|| | ||| || |||||||||||||||||
Sbjct: 186 gacaagtctgaaacttcatctagccatgg 214
>gb|CX541282.1|CX541282 s13dNF72A10GS081_465860 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 554
Score = 50.1 bits (25), Expect = 3e-004
Identities = 118/149 (79%)
Strand = Plus / Plus
Query: 346 gagctggtgcactcgctctcttacgtgtaccaaaggagcacaacagccatatcagttgtt 405
||||| |||||||| ||||| || || || || ||||||| || ||||| || ||||||
Sbjct: 41 gagcttgtgcactctctctcctatgtttatcagcggagcactactgccatctctgttgtt 100
Query: 406 gctcccatctgctacgcccaccttgcagccgcccaggttgggcagttcataaagttcgac 465
||||| |||||||| ||||| | || || | || || || |||||||| ||||| ||
Sbjct: 101 gctccaatctgctatgcccatttggctgcttctcaagtgggacagttcatgaagtttgaa 160
Query: 466 gagatgtcggagacttcatctagccatgg 494
|| | ||| || |||||||||||||||||
Sbjct: 161 gacaagtctgaaacttcatctagccatgg 189
>gb|AL389158.1|AL389158 MtBC53B05R1 MtBC Medicago truncatula cDNA clone MtBC53B05 T7, mRNA
sequence
Length = 550
Score = 46.1 bits (23), Expect = 0.005
Identities = 92/115 (80%)
Strand = Plus / Plus
Query: 380 ggagcacaacagccatatcagttgttgctcccatctgctacgcccaccttgcagccgccc 439
||||||| || ||||| || ||||||||||| |||||||| ||||| | || || | |
Sbjct: 5 ggagcactactgccatctctgttgttgctccaatctgctatgcccatttggctgcttctc 64
Query: 440 aggttgggcagttcataaagttcgacgagatgtcggagacttcatctagccatgg 494
| || || |||||||| ||||| || || | ||| || |||||||||||||||||
Sbjct: 65 aagtgggacagttcatgaagtttgaagacaagtctgaaacttcatctagccatgg 119
>gb|BF003223.1|BF003223 EST431771 KV1 Medicago truncatula cDNA clone pKV1-3E1, mRNA
sequence
Length = 397
Score = 46.1 bits (23), Expect = 0.005
Identities = 158/203 (77%)
Strand = Plus / Plus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||| | ||||| ||| ||||||||||||| |||| ||||||||| | ||| | |||
Sbjct: 142 actgttatcgacaataaaatctgtcatccaagaaactatgatttctacctctgtgctcat 201
Query: 265 gctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgagataggc 324
||||| ||||| || || | ||||| || ||||| || | |||| ||| ||||| |||
Sbjct: 202 gctgggatgataggcaccagtaggcctacccactaccatgtgctgcttgatgagattggc 261
Query: 325 ttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaaggagc 384
||| |||||||| || || ||||| || || || || || || || ||||| ||||||
Sbjct: 262 ttctcccctgatgaacttcaagagcttgttcattccctgtcatatgtttaccagaggagc 321
Query: 385 acaacagccatatcagttgttgc 407
|| || || || |||||||||||
Sbjct: 322 acgactgctatttcagttgttgc 344
>gb|BF640885.1|BF640885 NF050D12IN1F1101 Insect herbivory Medicago truncatula cDNA clone
NF050D12IN 5', mRNA sequence
Length = 677
Score = 46.1 bits (23), Expect = 0.005
Identities = 158/203 (77%)
Strand = Plus / Plus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||| | ||||| ||| | ||||||||||| |||| ||||||||| | ||| | |||
Sbjct: 292 actgttatcgacaataaaatttgtcatccaagaaactatgatttctacctctgtgctcat 351
Query: 265 gctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgagataggc 324
||||| ||||| || || | ||||| || ||||| || | |||| ||| ||||| |||
Sbjct: 352 gctgggatgataggcaccagtaggcctacccactaccatgtgctgcttgatgagattggc 411
Query: 325 ttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaaggagc 384
||| |||||||| || |||||||| || || || || || || || ||||| ||||||
Sbjct: 412 ttctcccctgatgaacttcaggagcttgttcattccctgtcatatgtttaccagaggagc 471
Query: 385 acaacagccatatcagttgttgc 407
|| || || || |||||||||||
Sbjct: 472 acgactgctatttcagttgttgc 494
>gb|CX542164.1|CX542164 s13dNF86A08GS055_467636 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 564
Score = 46.1 bits (23), Expect = 0.005
Identities = 158/203 (77%)
Strand = Plus / Plus
Query: 205 actgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacat 264
|||||| | ||||| ||| | ||||||||||| |||| ||||||||| | ||| | |||
Sbjct: 329 actgttatcgacaataaaatttgtcatccaagaaactatgatttctacctctgtgctcat 388
Query: 265 gctggaatgattgggactaccaggccaactcactatcacatcctgcatgacgagataggc 324
||||| ||||| || || | ||||| || ||||| || | |||| ||| ||||| |||
Sbjct: 389 gctgggatgataggcaccagtaggcctacccactaccatgtgctgcttgatgagattggc 448
Query: 325 ttcaatcctgatgacctgcaggagctggtgcactcgctctcttacgtgtaccaaaggagc 384
||| |||||||| || |||||||| || || || || || || || ||||| ||||||
Sbjct: 449 ttctcccctgatgaacttcaggagcttgttcattccctgtcatatgtttaccagaggagc 508
Query: 385 acaacagccatatcagttgttgc 407
|| || || || |||||||||||
Sbjct: 509 acgactgctatttcagttgttgc 531
>gb|BI311950.1|BI311950 EST5313700 GESD Medicago truncatula cDNA clone pGESD16D7 5' end,
mRNA sequence
Length = 592
Score = 44.1 bits (22), Expect = 0.019
Identities = 79/98 (80%)
Strand = Plus / Plus
Query: 206 ctgttgttgacaacaaagtctgtcatccaaggaacttcgatttctacatgtgttcacatg 265
||||||| |||| |||| | || ||||| ||||| | ||||| || |||||| | ||||
Sbjct: 1 ctgttgtggacagcaaaatttgccatcctaggaattatgatttttatatgtgtgctcatg 60
Query: 266 ctggaatgattgggactaccaggccaactcactatcac 303
||||||||||||| || | ||| ||||| || ||||||
Sbjct: 61 ctggaatgattggtacaagcagaccaacacattatcac 98
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 176,673
Number of Sequences: 392609
Number of extensions: 176673
Number of successful extensions: 12541
Number of sequences better than 0.5: 28
Number of HSP's better than 0.5 without gapping: 26
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 12435
Number of HSP's gapped (non-prelim): 105
length of query: 867
length of database: 441,732,993
effective HSP length: 20
effective length of query: 847
effective length of database: 433,880,813
effective search space: 367497048611
effective search space used: 367497048611
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)