BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404725.2.9
(1195 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ146505.1|BQ146505 NF106C09FL1F1070 Developing flower M... 62 1e-007
gb|AC146567.10| Medicago truncatula clone mth2-99p24, compl... 62 1e-007
gb|CX538744.1|CX538744 s13dNF0AA03GS017_460742 Germinating ... 58 2e-006
gb|AC150776.2| Medicago truncatula chromosome 7 BAC clone m... 40 0.42
>gb|BQ146505.1|BQ146505 NF106C09FL1F1070 Developing flower Medicago truncatula cDNA clone
NF106C09FL 5', mRNA sequence
Length = 649
Score = 61.9 bits (31), Expect = 1e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 71 taccactacggccagatcaacatcacccgcaccatcaagctcg 113
||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct: 380 taccattacggacagatcaacatcacccgtaccatcaagctcg 422
>gb|AC146567.10| Medicago truncatula clone mth2-99p24, complete sequence
Length = 141672
Score = 61.9 bits (31), Expect = 1e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 71 taccactacggccagatcaacatcacccgcaccatcaagctcg 113
||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct: 25476 taccattacggacagatcaacatcacccgtaccatcaagctcg 25518
Score = 52.0 bits (26), Expect = 1e-004
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 51 ggcccaacccgcaggggtcgtaccactacggccagatcaacatcacccgcaccatcaagc 110
|||||||||| || || || ||||| ||||| ||||||||||||||||| ||| | ||||
Sbjct: 31726 ggcccaacccacaaggttcttaccattacggtcagatcaacatcacccgtaccgttaagc 31785
Query: 111 tc 112
||
Sbjct: 31786 tc 31787
>gb|CX538744.1|CX538744 s13dNF0AA03GS017_460742 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 408
Score = 58.0 bits (29), Expect = 2e-006
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 53 cccaacccgcaggggtcgtaccactacggccagatcaacatcacccgcaccatcaag 109
|||||||| ||||| || ||||| ||||| ||||||||||| |||||||| ||||||
Sbjct: 72 cccaaccctcagggatcttaccattacggtcagatcaacattacccgcacaatcaag 128
>gb|AC150776.2| Medicago truncatula chromosome 7 BAC clone mte1-45n16, complete
sequence
Length = 107886
Score = 40.1 bits (20), Expect = 0.42
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 996 ttaagtatatgatgatatat 1015
||||||||||||||||||||
Sbjct: 53741 ttaagtatatgatgatatat 53722
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 197,247
Number of Sequences: 392609
Number of extensions: 197247
Number of successful extensions: 16182
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16163
Number of HSP's gapped (non-prelim): 19
length of query: 1195
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1175
effective length of database: 433,880,813
effective search space: 509809955275
effective search space used: 509809955275
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)