BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2276642.2.1
(1062 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC171166.3| Medicago truncatula chromosome 7 clone mth2-... 60 4e-007
gb|AW736158.1|AW736158 EST332144 KV3 Medicago truncatula cD... 50 4e-004
gb|BI272677.1|BI272677 NF027H05FL1F1047 Developing flower M... 50 4e-004
gb|CG964558.1|CG964558 MBEHF62TF mth2 Medicago truncatula g... 40 0.37
gb|AL369527.1|AL369527 MtBA31F08F1 MtBA Medicago truncatula... 40 0.37
gb|AL378557.1|AL378557 MtBB38H11R1 MtBB Medicago truncatula... 40 0.37
gb|AL382871.1|AL382871 MtBC10D12F1 MtBC Medicago truncatula... 40 0.37
gb|AL382872.1|AL382872 MtBC10D12R1 MtBC Medicago truncatula... 40 0.37
gb|BQ148467.1|BQ148467 NF068F08FL1F1075 Developing flower M... 40 0.37
gb|AC155228.11| Medicago truncatula clone mth2-139i19, comp... 40 0.37
>gb|AC171166.3| Medicago truncatula chromosome 7 clone mth2-119c4, *** SEQUENCING IN
PROGRESS ***, 3 ordered pieces
Length = 128881
Score = 60.0 bits (30), Expect = 4e-007
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 761 gaaacacctgagtcgtgcaacgagaaacaccatcccacttgttgtaagtcccacggctat 820
|||| ||||| |||||||| |||| ||||||||||||||| |||||||| | | |||||
Sbjct: 122615 gaaatacctgtgtcgtgcagcgagcaacaccatcccacttattgtaagtacttctgctat 122674
Query: 821 tctcagtcca 830
| ||||||||
Sbjct: 122675 tttcagtcca 122684
Score = 46.1 bits (23), Expect = 0.006
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 857 agaatgcatatccatcaatgtggtaggtctggacagttgagtcattgttctgaaa 911
|||||||||||||||| | ||||||| ||||||||| | |||||| || |||||
Sbjct: 122814 agaatgcatatccatccaaatggtaggactggacagtggtgtcattattttgaaa 122868
>gb|AW736158.1|AW736158 EST332144 KV3 Medicago truncatula cDNA clone pKV3-5D16, mRNA
sequence
Length = 583
Score = 50.1 bits (25), Expect = 4e-004
Identities = 67/81 (82%)
Strand = Plus / Minus
Query: 790 ccatcccacttgttgtaagtcccacggctattctcagtccactcaccatagtccattcct 849
|||||||||||||| || || || | ||||||||||| ||| || || ||||||| |||
Sbjct: 298 ccatcccacttgttatatgtacccctgctattctcagaccaatctccgaagtccatccct 239
Query: 850 acaacccagaatgcatatcca 870
||||| | ||||||||||||
Sbjct: 238 acaacaaaaaatgcatatcca 218
Score = 40.1 bits (20), Expect = 0.37
Identities = 53/64 (82%)
Strand = Plus / Minus
Query: 652 accctgatgtaagtctcctgacccagataccacgtgtccaggttttctgtccgtacattc 711
||||||||||| || || ||||| |||||||| | || ||||||||||| | || ||||
Sbjct: 436 accctgatgtatgtttcttgaccaagataccatgaatcaaggttttctgttcttagattc 377
Query: 712 caaa 715
||||
Sbjct: 376 caaa 373
>gb|BI272677.1|BI272677 NF027H05FL1F1047 Developing flower Medicago truncatula cDNA clone
NF027H05FL 5', mRNA sequence
Length = 498
Score = 50.1 bits (25), Expect = 4e-004
Identities = 67/81 (82%)
Strand = Plus / Minus
Query: 790 ccatcccacttgttgtaagtcccacggctattctcagtccactcaccatagtccattcct 849
|||||||||||||| || || || | ||||||||||| ||| || || ||||||| |||
Sbjct: 186 ccatcccacttgttatatgtacccctgctattctcagaccaatctccgaagtccatccct 127
Query: 850 acaacccagaatgcatatcca 870
||||| | ||||||||||||
Sbjct: 126 acaacaaaaaatgcatatcca 106
Score = 40.1 bits (20), Expect = 0.37
Identities = 53/64 (82%)
Strand = Plus / Minus
Query: 652 accctgatgtaagtctcctgacccagataccacgtgtccaggttttctgtccgtacattc 711
||||||||||| || || ||||| |||||||| | || ||||||||||| | || ||||
Sbjct: 324 accctgatgtatgtttcttgaccaagataccatgaatcaaggttttctgttcttagattc 265
Query: 712 caaa 715
||||
Sbjct: 264 caaa 261
>gb|CG964558.1|CG964558 MBEHF62TF mth2 Medicago truncatula genomic clone 55K4, DNA sequence
Length = 911
Score = 40.1 bits (20), Expect = 0.37
Identities = 53/64 (82%)
Strand = Plus / Minus
Query: 652 accctgatgtaagtctcctgacccagataccacgtgtccaggttttctgtccgtacattc 711
||||||||||| || || ||||| |||||||| | || ||||||||||| | || ||||
Sbjct: 848 accctgatgtatgtttcttgaccaagataccatgaatcaaggttttctgttcttagattc 789
Query: 712 caaa 715
||||
Sbjct: 788 caaa 785
>gb|AL369527.1|AL369527 MtBA31F08F1 MtBA Medicago truncatula cDNA clone MtBA31F08 T3, mRNA
sequence
Length = 369
Score = 40.1 bits (20), Expect = 0.37
Identities = 53/64 (82%)
Strand = Plus / Minus
Query: 652 accctgatgtaagtctcctgacccagataccacgtgtccaggttttctgtccgtacattc 711
||||||||||| || || ||||| |||||||| | || ||||||||||| | || ||||
Sbjct: 242 accctgatgtatgtttcttgaccaagataccatgaatcaaggttttctgttcttagattc 183
Query: 712 caaa 715
||||
Sbjct: 182 caaa 179
>gb|AL378557.1|AL378557 MtBB38H11R1 MtBB Medicago truncatula cDNA clone MtBB38H11 T7, mRNA
sequence
Length = 393
Score = 40.1 bits (20), Expect = 0.37
Identities = 53/64 (82%)
Strand = Plus / Minus
Query: 652 accctgatgtaagtctcctgacccagataccacgtgtccaggttttctgtccgtacattc 711
||||||||||| || || ||||| |||||||| | || ||||||||||| | || ||||
Sbjct: 84 accctgatgtatgtttcttgaccaagataccatgaatcaaggttttctgttcttagattc 25
Query: 712 caaa 715
||||
Sbjct: 24 caaa 21
>gb|AL382871.1|AL382871 MtBC10D12F1 MtBC Medicago truncatula cDNA clone MtBC10D12 T3, mRNA
sequence
Length = 489
Score = 40.1 bits (20), Expect = 0.37
Identities = 53/64 (82%)
Strand = Plus / Minus
Query: 652 accctgatgtaagtctcctgacccagataccacgtgtccaggttttctgtccgtacattc 711
||||||||||| || || ||||| |||||||| | || ||||||||||| | || ||||
Sbjct: 174 accctgatgtatgtttcttgaccaagataccatgaatcaaggttttctgttcttagattc 115
Query: 712 caaa 715
||||
Sbjct: 114 caaa 111
>gb|AL382872.1|AL382872 MtBC10D12R1 MtBC Medicago truncatula cDNA clone MtBC10D12 T7, mRNA
sequence
Length = 472
Score = 40.1 bits (20), Expect = 0.37
Identities = 53/64 (82%)
Strand = Plus / Minus
Query: 652 accctgatgtaagtctcctgacccagataccacgtgtccaggttttctgtccgtacattc 711
||||||||||| || || ||||| |||||||| | || ||||||||||| | || ||||
Sbjct: 81 accctgatgtatgtttcttgaccaagataccatgaatcaaggttttctgttcttagattc 22
Query: 712 caaa 715
||||
Sbjct: 21 caaa 18
>gb|BQ148467.1|BQ148467 NF068F08FL1F1075 Developing flower Medicago truncatula cDNA clone
NF068F08FL 5', mRNA sequence
Length = 635
Score = 40.1 bits (20), Expect = 0.37
Identities = 53/64 (82%)
Strand = Plus / Minus
Query: 652 accctgatgtaagtctcctgacccagataccacgtgtccaggttttctgtccgtacattc 711
||||||||||| || || ||||| |||||||| | || ||||||||||| | || ||||
Sbjct: 155 accctgatgtatgtttcttgaccaagataccatgaatcaaggttttctgttcttagattc 96
Query: 712 caaa 715
||||
Sbjct: 95 caaa 92
>gb|AC155228.11| Medicago truncatula clone mth2-139i19, complete sequence
Length = 112322
Score = 40.1 bits (20), Expect = 0.37
Identities = 53/64 (82%)
Strand = Plus / Minus
Query: 652 accctgatgtaagtctcctgacccagataccacgtgtccaggttttctgtccgtacattc 711
||||||||||| || || ||||| |||||||| | || ||||||||||| | || ||||
Sbjct: 42230 accctgatgtatgtttcttgaccaagataccatgaatcaaggttttctgttcttagattc 42171
Query: 712 caaa 715
||||
Sbjct: 42170 caaa 42167
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 220,983
Number of Sequences: 392609
Number of extensions: 220983
Number of successful extensions: 14376
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14345
Number of HSP's gapped (non-prelim): 31
length of query: 1062
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1042
effective length of database: 433,880,813
effective search space: 452103807146
effective search space used: 452103807146
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)