BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2276642.2.1
         (1062 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AC171166.3|  Medicago truncatula chromosome 7 clone mth2-...    60   4e-007
gb|AW736158.1|AW736158  EST332144 KV3 Medicago truncatula cD...    50   4e-004
gb|BI272677.1|BI272677  NF027H05FL1F1047 Developing flower M...    50   4e-004
gb|CG964558.1|CG964558  MBEHF62TF mth2 Medicago truncatula g...    40   0.37 
gb|AL369527.1|AL369527  MtBA31F08F1 MtBA Medicago truncatula...    40   0.37 
gb|AL378557.1|AL378557  MtBB38H11R1 MtBB Medicago truncatula...    40   0.37 
gb|AL382871.1|AL382871  MtBC10D12F1 MtBC Medicago truncatula...    40   0.37 
gb|AL382872.1|AL382872  MtBC10D12R1 MtBC Medicago truncatula...    40   0.37 
gb|BQ148467.1|BQ148467  NF068F08FL1F1075 Developing flower M...    40   0.37 
gb|AC155228.11|  Medicago truncatula clone mth2-139i19, comp...    40   0.37 
>gb|AC171166.3| Medicago truncatula chromosome 7 clone mth2-119c4, *** SEQUENCING IN
              PROGRESS ***, 3 ordered pieces
          Length = 128881

 Score = 60.0 bits (30), Expect = 4e-007
 Identities = 60/70 (85%)
 Strand = Plus / Plus

                                                                          
Query: 761    gaaacacctgagtcgtgcaacgagaaacaccatcccacttgttgtaagtcccacggctat 820
              |||| ||||| |||||||| |||| ||||||||||||||| |||||||| |  | |||||
Sbjct: 122615 gaaatacctgtgtcgtgcagcgagcaacaccatcccacttattgtaagtacttctgctat 122674

                        
Query: 821    tctcagtcca 830
              | ||||||||
Sbjct: 122675 tttcagtcca 122684

 Score = 46.1 bits (23), Expect = 0.006
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                     
Query: 857    agaatgcatatccatcaatgtggtaggtctggacagttgagtcattgttctgaaa 911
              |||||||||||||||| |  ||||||| ||||||||| | |||||| || |||||
Sbjct: 122814 agaatgcatatccatccaaatggtaggactggacagtggtgtcattattttgaaa 122868
>gb|AW736158.1|AW736158 EST332144 KV3 Medicago truncatula cDNA clone pKV3-5D16, mRNA
           sequence
          Length = 583

 Score = 50.1 bits (25), Expect = 4e-004
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                       
Query: 790 ccatcccacttgttgtaagtcccacggctattctcagtccactcaccatagtccattcct 849
           |||||||||||||| || || || | ||||||||||| ||| || ||  ||||||| |||
Sbjct: 298 ccatcccacttgttatatgtacccctgctattctcagaccaatctccgaagtccatccct 239

                                
Query: 850 acaacccagaatgcatatcca 870
           |||||  | ||||||||||||
Sbjct: 238 acaacaaaaaatgcatatcca 218

 Score = 40.1 bits (20), Expect = 0.37
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                       
Query: 652 accctgatgtaagtctcctgacccagataccacgtgtccaggttttctgtccgtacattc 711
           ||||||||||| || || ||||| |||||||| |  || ||||||||||| | || ||||
Sbjct: 436 accctgatgtatgtttcttgaccaagataccatgaatcaaggttttctgttcttagattc 377

               
Query: 712 caaa 715
           ||||
Sbjct: 376 caaa 373
>gb|BI272677.1|BI272677 NF027H05FL1F1047 Developing flower Medicago truncatula cDNA clone
           NF027H05FL 5', mRNA sequence
          Length = 498

 Score = 50.1 bits (25), Expect = 4e-004
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                       
Query: 790 ccatcccacttgttgtaagtcccacggctattctcagtccactcaccatagtccattcct 849
           |||||||||||||| || || || | ||||||||||| ||| || ||  ||||||| |||
Sbjct: 186 ccatcccacttgttatatgtacccctgctattctcagaccaatctccgaagtccatccct 127

                                
Query: 850 acaacccagaatgcatatcca 870
           |||||  | ||||||||||||
Sbjct: 126 acaacaaaaaatgcatatcca 106

 Score = 40.1 bits (20), Expect = 0.37
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                       
Query: 652 accctgatgtaagtctcctgacccagataccacgtgtccaggttttctgtccgtacattc 711
           ||||||||||| || || ||||| |||||||| |  || ||||||||||| | || ||||
Sbjct: 324 accctgatgtatgtttcttgaccaagataccatgaatcaaggttttctgttcttagattc 265

               
Query: 712 caaa 715
           ||||
Sbjct: 264 caaa 261
>gb|CG964558.1|CG964558 MBEHF62TF mth2 Medicago truncatula genomic clone 55K4, DNA sequence
          Length = 911

 Score = 40.1 bits (20), Expect = 0.37
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                       
Query: 652 accctgatgtaagtctcctgacccagataccacgtgtccaggttttctgtccgtacattc 711
           ||||||||||| || || ||||| |||||||| |  || ||||||||||| | || ||||
Sbjct: 848 accctgatgtatgtttcttgaccaagataccatgaatcaaggttttctgttcttagattc 789

               
Query: 712 caaa 715
           ||||
Sbjct: 788 caaa 785
>gb|AL369527.1|AL369527 MtBA31F08F1 MtBA Medicago truncatula cDNA clone MtBA31F08 T3, mRNA
           sequence
          Length = 369

 Score = 40.1 bits (20), Expect = 0.37
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                       
Query: 652 accctgatgtaagtctcctgacccagataccacgtgtccaggttttctgtccgtacattc 711
           ||||||||||| || || ||||| |||||||| |  || ||||||||||| | || ||||
Sbjct: 242 accctgatgtatgtttcttgaccaagataccatgaatcaaggttttctgttcttagattc 183

               
Query: 712 caaa 715
           ||||
Sbjct: 182 caaa 179
>gb|AL378557.1|AL378557 MtBB38H11R1 MtBB Medicago truncatula cDNA clone MtBB38H11 T7, mRNA
           sequence
          Length = 393

 Score = 40.1 bits (20), Expect = 0.37
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                       
Query: 652 accctgatgtaagtctcctgacccagataccacgtgtccaggttttctgtccgtacattc 711
           ||||||||||| || || ||||| |||||||| |  || ||||||||||| | || ||||
Sbjct: 84  accctgatgtatgtttcttgaccaagataccatgaatcaaggttttctgttcttagattc 25

               
Query: 712 caaa 715
           ||||
Sbjct: 24  caaa 21
>gb|AL382871.1|AL382871 MtBC10D12F1 MtBC Medicago truncatula cDNA clone MtBC10D12 T3, mRNA
           sequence
          Length = 489

 Score = 40.1 bits (20), Expect = 0.37
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                       
Query: 652 accctgatgtaagtctcctgacccagataccacgtgtccaggttttctgtccgtacattc 711
           ||||||||||| || || ||||| |||||||| |  || ||||||||||| | || ||||
Sbjct: 174 accctgatgtatgtttcttgaccaagataccatgaatcaaggttttctgttcttagattc 115

               
Query: 712 caaa 715
           ||||
Sbjct: 114 caaa 111
>gb|AL382872.1|AL382872 MtBC10D12R1 MtBC Medicago truncatula cDNA clone MtBC10D12 T7, mRNA
           sequence
          Length = 472

 Score = 40.1 bits (20), Expect = 0.37
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                       
Query: 652 accctgatgtaagtctcctgacccagataccacgtgtccaggttttctgtccgtacattc 711
           ||||||||||| || || ||||| |||||||| |  || ||||||||||| | || ||||
Sbjct: 81  accctgatgtatgtttcttgaccaagataccatgaatcaaggttttctgttcttagattc 22

               
Query: 712 caaa 715
           ||||
Sbjct: 21  caaa 18
>gb|BQ148467.1|BQ148467 NF068F08FL1F1075 Developing flower Medicago truncatula cDNA clone
           NF068F08FL 5', mRNA sequence
          Length = 635

 Score = 40.1 bits (20), Expect = 0.37
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                       
Query: 652 accctgatgtaagtctcctgacccagataccacgtgtccaggttttctgtccgtacattc 711
           ||||||||||| || || ||||| |||||||| |  || ||||||||||| | || ||||
Sbjct: 155 accctgatgtatgtttcttgaccaagataccatgaatcaaggttttctgttcttagattc 96

               
Query: 712 caaa 715
           ||||
Sbjct: 95  caaa 92
>gb|AC155228.11| Medicago truncatula clone mth2-139i19, complete sequence
          Length = 112322

 Score = 40.1 bits (20), Expect = 0.37
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                         
Query: 652   accctgatgtaagtctcctgacccagataccacgtgtccaggttttctgtccgtacattc 711
             ||||||||||| || || ||||| |||||||| |  || ||||||||||| | || ||||
Sbjct: 42230 accctgatgtatgtttcttgaccaagataccatgaatcaaggttttctgttcttagattc 42171

                 
Query: 712   caaa 715
             ||||
Sbjct: 42170 caaa 42167
  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 220,983
Number of Sequences: 392609
Number of extensions: 220983
Number of successful extensions: 14376
Number of sequences better than  0.5: 10
Number of HSP's better than  0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14345
Number of HSP's gapped (non-prelim): 31
length of query: 1062
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1042
effective length of database: 433,880,813
effective search space: 452103807146
effective search space used: 452103807146
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)