BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192909.2.3
(674 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL388148.1|AL388148 MtBC46H07F1 MtBC Medicago truncatula... 40 0.23
gb|BF005277.1|BF005277 EST433775 DSLC Medicago truncatula c... 40 0.23
gb|BF005344.1|BF005344 EST433842 DSLC Medicago truncatula c... 40 0.23
gb|BF005522.1|BF005522 EST434020 DSLC Medicago truncatula c... 40 0.23
gb|BF006142.1|BF006142 EST434712 DSLC Medicago truncatula c... 40 0.23
gb|BF634818.1|BF634818 NF070F06DT1F1058 Drought Medicago tr... 40 0.23
gb|BE316830.2|BE316830 NF066F10LF1F1079 Developing leaf Med... 40 0.23
gb|BE249357.2|BE249357 NF013H05LF1F1047 Developing leaf Med... 40 0.23
gb|BG449827.1|BG449827 NF053E11IN1F1084 Insect herbivory Me... 40 0.23
gb|BG451809.1|BG451809 NF101C04DT1F1023 Drought Medicago tr... 40 0.23
gb|BG452585.1|BG452585 NF078H08LF1F1073 Developing leaf Med... 40 0.23
gb|BG453987.1|BG453987 NF103E01LF1F1003 Developing leaf Med... 40 0.23
gb|BG456366.1|BG456366 NF076H03PL1F1030 Phosphate starved l... 40 0.23
gb|BG457343.1|BG457343 NF102A04PL1F1023 Phosphate starved l... 40 0.23
gb|BI263955.1|BI263955 NF093E07PL1F1055 Phosphate starved l... 40 0.23
gb|BI264104.1|BI264104 NF114H08PL1F1076 Phosphate starved l... 40 0.23
gb|BI264497.1|BI264497 NF108B08PL1F1073 Phosphate starved l... 40 0.23
gb|BQ147730.1|BQ147730 NF046A12FL1F1088 Developing flower M... 40 0.23
gb|AJ497090.1|AJ497090 AJ497090 MTFLOW Medicago truncatula ... 40 0.23
gb|CX517110.1|CX517110 s13dNF12G01VI008_398691 Virus-Infect... 40 0.23
gb|CX517192.1|CX517192 s13dNF14H05VI048_398855 Virus-Infect... 40 0.23
gb|CX517484.1|CX517484 s13dNF13H08VI076_399987 Virus-Infect... 40 0.23
gb|CX518057.1|CX518057 s13dNF31E08VI067_421827 Virus-Infect... 40 0.23
gb|CX519371.1|CX519371 s13dNF46B05VI043_442794 Virus-Infect... 40 0.23
gb|CX519416.1|CX519416 s13dNF46G04VI034_442884 Virus-Infect... 40 0.23
gb|CX520499.1|CX520499 s13dNF55E04VI024_448784 Virus-Infect... 40 0.23
gb|CX521291.1|CX521291 s13dNF81C02VI006_450368 Virus-Infect... 40 0.23
gb|CX521463.1|CX521463 s13dNF76D06VI048_450712 Virus-Infect... 40 0.23
gb|CX521546.1|CX521546 s13dNF1LD06VI058_468896 Virus-Infect... 40 0.23
gb|CX521672.1|CX521672 s13dNF1KH02VI016_469148 Virus-Infect... 40 0.23
gb|CX521934.1|CX521934 s13dNF1IA09VI067_469672 Virus-Infect... 40 0.23
gb|CX523341.1|CX523341 s13dNF1TD04VI042_472486 Virus-Infect... 40 0.23
gb|CX523471.1|CX523471 s13dNF1HH10VI092_474662 Virus-Infect... 40 0.23
gb|CX539900.1|CX539900 s13dNF0FE01GS003_463072 Germinating ... 40 0.23
gb|CX541862.1|CX541862 s13dNF71F11GS095_467032 Germinating ... 40 0.23
gb|AC133862.6| Medicago truncatula clone mth2-30d7, complet... 40 0.23
gb|AC124957.18| Medicago truncatula clone mth2-15k14, compl... 40 0.23
gb|AC146774.7| Medicago truncatula clone mth2-91k24, comple... 40 0.23
>gb|AL388148.1|AL388148 MtBC46H07F1 MtBC Medicago truncatula cDNA clone MtBC46H07 T3, mRNA
sequence
Length = 490
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 623 cgtcgctccagtcgtggaggatccacttcatg 654
||||||||||||| || || ||||||||||||
Sbjct: 159 cgtcgctccagtcatgaagaatccacttcatg 128
>gb|BF005277.1|BF005277 EST433775 DSLC Medicago truncatula cDNA clone pDSLC-31P14, mRNA
sequence
Length = 689
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 623 cgtcgctccagtcgtggaggatccacttcatg 654
||||||||||||| || || ||||||||||||
Sbjct: 535 cgtcgctccagtcatgaagaatccacttcatg 504
>gb|BF005344.1|BF005344 EST433842 DSLC Medicago truncatula cDNA clone pDSLC-37M11, mRNA
sequence
Length = 614
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 623 cgtcgctccagtcgtggaggatccacttcatg 654
||||||||||||| || || ||||||||||||
Sbjct: 469 cgtcgctccagtcatgaagaatccacttcatg 438
>gb|BF005522.1|BF005522 EST434020 DSLC Medicago truncatula cDNA clone pDSLC-37P9, mRNA
sequence
Length = 423
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 623 cgtcgctccagtcgtggaggatccacttcatg 654
||||||||||||| || || ||||||||||||
Sbjct: 180 cgtcgctccagtcatgaagaatccacttcatg 149
>gb|BF006142.1|BF006142 EST434712 DSLC Medicago truncatula cDNA clone pDSLC-39P20, mRNA
sequence
Length = 612
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 623 cgtcgctccagtcgtggaggatccacttcatg 654
||||||||||||| || || ||||||||||||
Sbjct: 204 cgtcgctccagtcatgaagaatccacttcatg 173
>gb|BF634818.1|BF634818 NF070F06DT1F1058 Drought Medicago truncatula cDNA clone NF070F06DT
5', mRNA sequence
Length = 683
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 623 cgtcgctccagtcgtggaggatccacttcatg 654
||||||||||||| || || ||||||||||||
Sbjct: 354 cgtcgctccagtcatgaagaatccacttcatg 323
>gb|BE316830.2|BE316830 NF066F10LF1F1079 Developing leaf Medicago truncatula cDNA clone
NF066F10LF 5', mRNA sequence
Length = 554
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 623 cgtcgctccagtcgtggaggatccacttcatg 654
||||||||||||| || || ||||||||||||
Sbjct: 37 cgtcgctccagtcatgaagaatccacttcatg 6
>gb|BE249357.2|BE249357 NF013H05LF1F1047 Developing leaf Medicago truncatula cDNA clone
NF013H05LF 5', mRNA sequence
Length = 381
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 623 cgtcgctccagtcgtggaggatccacttcatg 654
||||||||||||| || || ||||||||||||
Sbjct: 275 cgtcgctccagtcatgaagaatccacttcatg 244
>gb|BG449827.1|BG449827 NF053E11IN1F1084 Insect herbivory Medicago truncatula cDNA clone
NF053E11IN 5', mRNA sequence
Length = 660
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 623 cgtcgctccagtcgtggaggatccacttcatg 654
||||||||||||| || || ||||||||||||
Sbjct: 491 cgtcgctccagtcatgaagaatccacttcatg 460
>gb|BG451809.1|BG451809 NF101C04DT1F1023 Drought Medicago truncatula cDNA clone NF101C04DT
5', mRNA sequence
Length = 668
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 623 cgtcgctccagtcgtggaggatccacttcatg 654
||||||||||||| || || ||||||||||||
Sbjct: 321 cgtcgctccagtcatgaagaatccacttcatg 290
>gb|BG452585.1|BG452585 NF078H08LF1F1073 Developing leaf Medicago truncatula cDNA clone
NF078H08LF 5', mRNA sequence
Length = 669
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 623 cgtcgctccagtcgtggaggatccacttcatg 654
||||||||||||| || || ||||||||||||
Sbjct: 408 cgtcgctccagtcatgaagaatccacttcatg 377
>gb|BG453987.1|BG453987 NF103E01LF1F1003 Developing leaf Medicago truncatula cDNA clone
NF103E01LF 5', mRNA sequence
Length = 629
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 623 cgtcgctccagtcgtggaggatccacttcatg 654
||||||||||||| || || ||||||||||||
Sbjct: 202 cgtcgctccagtcatgaagaatccacttcatg 171
>gb|BG456366.1|BG456366 NF076H03PL1F1030 Phosphate starved leaf Medicago truncatula cDNA
clone NF076H03PL 5', mRNA sequence
Length = 679
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 623 cgtcgctccagtcgtggaggatccacttcatg 654
||||||||||||| || || ||||||||||||
Sbjct: 390 cgtcgctccagtcatgaagaatccacttcatg 359
>gb|BG457343.1|BG457343 NF102A04PL1F1023 Phosphate starved leaf Medicago truncatula cDNA
clone NF102A04PL 5', mRNA sequence
Length = 640
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 623 cgtcgctccagtcgtggaggatccacttcatg 654
||||||||||||| || || ||||||||||||
Sbjct: 500 cgtcgctccagtcatgaagaatccacttcatg 469
>gb|BI263955.1|BI263955 NF093E07PL1F1055 Phosphate starved leaf Medicago truncatula cDNA
clone NF093E07PL 5', mRNA sequence
Length = 686
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 623 cgtcgctccagtcgtggaggatccacttcatg 654
||||||||||||| || || ||||||||||||
Sbjct: 503 cgtcgctccagtcatgaagaatccacttcatg 472
>gb|BI264104.1|BI264104 NF114H08PL1F1076 Phosphate starved leaf Medicago truncatula cDNA
clone NF114H08PL 5', mRNA sequence
Length = 665
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 623 cgtcgctccagtcgtggaggatccacttcatg 654
||||||||||||| || || ||||||||||||
Sbjct: 160 cgtcgctccagtcatgaagaatccacttcatg 129
>gb|BI264497.1|BI264497 NF108B08PL1F1073 Phosphate starved leaf Medicago truncatula cDNA
clone NF108B08PL 5', mRNA sequence
Length = 654
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 623 cgtcgctccagtcgtggaggatccacttcatg 654
||||||||||||| || || ||||||||||||
Sbjct: 503 cgtcgctccagtcatgaagaatccacttcatg 472
>gb|BQ147730.1|BQ147730 NF046A12FL1F1088 Developing flower Medicago truncatula cDNA clone
NF046A12FL 5', mRNA sequence
Length = 652
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 623 cgtcgctccagtcgtggaggatccacttcatg 654
||||||||||||| || || ||||||||||||
Sbjct: 181 cgtcgctccagtcatgaagaatccacttcatg 150
>gb|AJ497090.1|AJ497090 AJ497090 MTFLOW Medicago truncatula cDNA clone mt--abc955104d09,
mRNA sequence
Length = 546
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 623 cgtcgctccagtcgtggaggatccacttcatg 654
||||||||||||| || || ||||||||||||
Sbjct: 42 cgtcgctccagtcatgaagaatccacttcatg 11
>gb|CX517110.1|CX517110 s13dNF12G01VI008_398691 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 543
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 623 cgtcgctccagtcgtggaggatccacttcatg 654
||||||||||||| || || ||||||||||||
Sbjct: 287 cgtcgctccagtcatgaagaatccacttcatg 256
>gb|CX517192.1|CX517192 s13dNF14H05VI048_398855 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 490
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 623 cgtcgctccagtcgtggaggatccacttcatg 654
||||||||||||| || || ||||||||||||
Sbjct: 143 cgtcgctccagtcatgaagaatccacttcatg 112
>gb|CX517484.1|CX517484 s13dNF13H08VI076_399987 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 576
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 623 cgtcgctccagtcgtggaggatccacttcatg 654
||||||||||||| || || ||||||||||||
Sbjct: 351 cgtcgctccagtcatgaagaatccacttcatg 320
>gb|CX518057.1|CX518057 s13dNF31E08VI067_421827 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 629
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 623 cgtcgctccagtcgtggaggatccacttcatg 654
||||||||||||| || || ||||||||||||
Sbjct: 359 cgtcgctccagtcatgaagaatccacttcatg 328
>gb|CX519371.1|CX519371 s13dNF46B05VI043_442794 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 563
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 623 cgtcgctccagtcgtggaggatccacttcatg 654
||||||||||||| || || ||||||||||||
Sbjct: 189 cgtcgctccagtcatgaagaatccacttcatg 158
>gb|CX519416.1|CX519416 s13dNF46G04VI034_442884 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 499
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 623 cgtcgctccagtcgtggaggatccacttcatg 654
||||||||||||| || || ||||||||||||
Sbjct: 351 cgtcgctccagtcatgaagaatccacttcatg 320
>gb|CX520499.1|CX520499 s13dNF55E04VI024_448784 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 496
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 623 cgtcgctccagtcgtggaggatccacttcatg 654
||||||||||||| || || ||||||||||||
Sbjct: 168 cgtcgctccagtcatgaagaatccacttcatg 137
>gb|CX521291.1|CX521291 s13dNF81C02VI006_450368 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 436
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 623 cgtcgctccagtcgtggaggatccacttcatg 654
||||||||||||| || || ||||||||||||
Sbjct: 168 cgtcgctccagtcatgaagaatccacttcatg 137
>gb|CX521463.1|CX521463 s13dNF76D06VI048_450712 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 71
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 623 cgtcgctccagtcgtggaggatccacttcatg 654
||||||||||||| || || ||||||||||||
Sbjct: 49 cgtcgctccagtcatgaagaatccacttcatg 18
>gb|CX521546.1|CX521546 s13dNF1LD06VI058_468896 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 534
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 623 cgtcgctccagtcgtggaggatccacttcatg 654
||||||||||||| || || ||||||||||||
Sbjct: 168 cgtcgctccagtcatgaagaatccacttcatg 137
>gb|CX521672.1|CX521672 s13dNF1KH02VI016_469148 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 559
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 623 cgtcgctccagtcgtggaggatccacttcatg 654
||||||||||||| || || ||||||||||||
Sbjct: 138 cgtcgctccagtcatgaagaatccacttcatg 107
>gb|CX521934.1|CX521934 s13dNF1IA09VI067_469672 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 605
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 623 cgtcgctccagtcgtggaggatccacttcatg 654
||||||||||||| || || ||||||||||||
Sbjct: 349 cgtcgctccagtcatgaagaatccacttcatg 318
>gb|CX523341.1|CX523341 s13dNF1TD04VI042_472486 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 546
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 623 cgtcgctccagtcgtggaggatccacttcatg 654
||||||||||||| || || ||||||||||||
Sbjct: 138 cgtcgctccagtcatgaagaatccacttcatg 107
>gb|CX523471.1|CX523471 s13dNF1HH10VI092_474662 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 550
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 623 cgtcgctccagtcgtggaggatccacttcatg 654
||||||||||||| || || ||||||||||||
Sbjct: 162 cgtcgctccagtcatgaagaatccacttcatg 131
>gb|CX539900.1|CX539900 s13dNF0FE01GS003_463072 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 524
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 623 cgtcgctccagtcgtggaggatccacttcatg 654
||||||||||||| || || ||||||||||||
Sbjct: 188 cgtcgctccagtcatgaagaatccacttcatg 157
>gb|CX541862.1|CX541862 s13dNF71F11GS095_467032 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 577
Score = 40.1 bits (20), Expect = 0.23
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 623 cgtcgctccagtcgtggaggatccacttcatg 654
||||||||||||| || || ||||||||||||
Sbjct: 297 cgtcgctccagtcatgaagaatccacttcatg 266
>gb|AC133862.6| Medicago truncatula clone mth2-30d7, complete sequence
Length = 130054
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 183 tgaagaaagaaaattaagca 202
||||||||||||||||||||
Sbjct: 123333 tgaagaaagaaaattaagca 123314
>gb|AC124957.18| Medicago truncatula clone mth2-15k14, complete sequence
Length = 140624
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 183 tgaagaaagaaaattaagca 202
||||||||||||||||||||
Sbjct: 22170 tgaagaaagaaaattaagca 22189
>gb|AC146774.7| Medicago truncatula clone mth2-91k24, complete sequence
Length = 122643
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 350 ttcacttgatgaactcgatg 369
||||||||||||||||||||
Sbjct: 86101 ttcacttgatgaactcgatg 86120
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 124,774
Number of Sequences: 392609
Number of extensions: 124774
Number of successful extensions: 11228
Number of sequences better than 0.5: 38
Number of HSP's better than 0.5 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11179
Number of HSP's gapped (non-prelim): 49
length of query: 674
length of database: 441,732,993
effective HSP length: 19
effective length of query: 655
effective length of database: 434,273,422
effective search space: 284449091410
effective search space used: 284449091410
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)