BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192593.2.1
(800 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW560306.1|AW560306 EST315354 DSIR Medicago truncatula c... 52 7e-005
gb|AL377700.1|AL377700 MtBB33C07F1 MtBB Medicago truncatula... 52 7e-005
gb|AW687510.2|AW687510 NF010D05RT1F1045 Developing root Med... 52 7e-005
gb|BE319664.2|BE319664 NF017D08RT1F1062 Developing root Med... 52 7e-005
gb|BG644873.1|BG644873 EST506492 KV3 Medicago truncatula cD... 52 7e-005
gb|CA921042.1|CA921042 EST638760 MTUS Medicago truncatula c... 52 7e-005
gb|BQ138414.1|BQ138414 NF003A11PH1F1083 Phoma-infected Medi... 48 0.001
gb|BE240492.1|BE240492 EST404541 MHRP- Medicago truncatula ... 40 0.28
gb|AL383518.1|AL383518 MtBC14G12F1 MtBC Medicago truncatula... 40 0.28
gb|AL383519.1|AL383519 MtBC14G12R1 MtBC Medicago truncatula... 40 0.28
gb|BG645317.1|BG645317 EST506936 KV3 Medicago truncatula cD... 40 0.28
gb|AC155101.19| Medicago truncatula clone mth2-139j13, comp... 40 0.28
>gb|AW560306.1|AW560306 EST315354 DSIR Medicago truncatula cDNA clone pDSIR-26B4, mRNA
sequence
Length = 643
Score = 52.0 bits (26), Expect = 7e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 285 gcacaggatgaaatctttgggccggtgatggctctcatgaaattcaagac 334
|||||||||||||| ||||| || |||||||| || ||||| ||||||||
Sbjct: 560 gcacaggatgaaatatttggccctgtgatggcactaatgaagttcaagac 511
>gb|AL377700.1|AL377700 MtBB33C07F1 MtBB Medicago truncatula cDNA clone MtBB33C07 T3, mRNA
sequence
Length = 473
Score = 52.0 bits (26), Expect = 7e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 285 gcacaggatgaaatctttgggccggtgatggctctcatgaaattcaagac 334
|||||||||||||| ||||| || |||||||| || ||||| ||||||||
Sbjct: 139 gcacaggatgaaatatttggccctgtgatggcactaatgaagttcaagac 188
>gb|AW687510.2|AW687510 NF010D05RT1F1045 Developing root Medicago truncatula cDNA clone
NF010D05RT 5', mRNA sequence
Length = 558
Score = 52.0 bits (26), Expect = 7e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 285 gcacaggatgaaatctttgggccggtgatggctctcatgaaattcaagac 334
|||||||||||||| ||||| || |||||||| || ||||| ||||||||
Sbjct: 297 gcacaggatgaaatatttggccctgtgatggcactaatgaagttcaagac 346
>gb|BE319664.2|BE319664 NF017D08RT1F1062 Developing root Medicago truncatula cDNA clone
NF017D08RT 5', mRNA sequence
Length = 499
Score = 52.0 bits (26), Expect = 7e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 285 gcacaggatgaaatctttgggccggtgatggctctcatgaaattcaagac 334
|||||||||||||| ||||| || |||||||| || ||||| ||||||||
Sbjct: 263 gcacaggatgaaatatttggccctgtgatggcactaatgaagttcaagac 312
>gb|BG644873.1|BG644873 EST506492 KV3 Medicago truncatula cDNA clone pKV3-38H21 5' end,
mRNA sequence
Length = 740
Score = 52.0 bits (26), Expect = 7e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 285 gcacaggatgaaatctttgggccggtgatggctctcatgaaattcaagac 334
|||||||||||||| ||||| || |||||||| || ||||| ||||||||
Sbjct: 408 gcacaggatgaaatatttggccctgtgatggcactaatgaagttcaagac 359
>gb|CA921042.1|CA921042 EST638760 MTUS Medicago truncatula cDNA clone MTUS-35D1, mRNA
sequence
Length = 674
Score = 52.0 bits (26), Expect = 7e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 285 gcacaggatgaaatctttgggccggtgatggctctcatgaaattcaagac 334
|||||||||||||| ||||| || |||||||| || ||||| ||||||||
Sbjct: 389 gcacaggatgaaatatttggccctgtgatggcactaatgaagttcaagac 340
>gb|BQ138414.1|BQ138414 NF003A11PH1F1083 Phoma-infected Medicago truncatula cDNA clone
NF003A11PH 5', mRNA sequence
Length = 669
Score = 48.1 bits (24), Expect = 0.001
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 15 cgcatctacgtgcaggaagggatctacgacgagttc 50
||||||||||| ||||| | ||||||||||||||||
Sbjct: 376 cgcatctacgtccaggaggagatctacgacgagttc 411
>gb|BE240492.1|BE240492 EST404541 MHRP- Medicago truncatula cDNA clone pMHRP-45I6, mRNA
sequence
Length = 495
Score = 40.1 bits (20), Expect = 0.28
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 285 gcacaggatgaaatctttgggccggtgatggc 316
|||||||||||||| ||||| || ||||||||
Sbjct: 97 gcacaggatgaaatatttggtcctgtgatggc 128
>gb|AL383518.1|AL383518 MtBC14G12F1 MtBC Medicago truncatula cDNA clone MtBC14G12 T3, mRNA
sequence
Length = 464
Score = 40.1 bits (20), Expect = 0.28
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 285 gcacaggatgaaatctttgggccggtgatggc 316
|||||||||||||| ||||| || ||||||||
Sbjct: 95 gcacaggatgaaatatttggtcctgtgatggc 126
>gb|AL383519.1|AL383519 MtBC14G12R1 MtBC Medicago truncatula cDNA clone MtBC14G12 T7, mRNA
sequence
Length = 526
Score = 40.1 bits (20), Expect = 0.28
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 285 gcacaggatgaaatctttgggccggtgatggc 316
|||||||||||||| ||||| || ||||||||
Sbjct: 16 gcacaggatgaaatatttggtcctgtgatggc 47
>gb|BG645317.1|BG645317 EST506936 KV3 Medicago truncatula cDNA clone pKV3-39J20 5' end,
mRNA sequence
Length = 768
Score = 40.1 bits (20), Expect = 0.28
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 285 gcacaggatgaaatctttgggccggtgatggc 316
|||||||||||||| ||||| || ||||||||
Sbjct: 529 gcacaggatgaaatatttggtcctgtgatggc 560
>gb|AC155101.19| Medicago truncatula clone mth2-139j13, complete sequence
Length = 124152
Score = 40.1 bits (20), Expect = 0.28
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 285 gcacaggatgaaatctttgggccggtgatggc 316
|||||||||||||| ||||| || ||||||||
Sbjct: 889 gcacaggatgaaatatttggtcctgtgatggc 858
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 120,619
Number of Sequences: 392609
Number of extensions: 120619
Number of successful extensions: 8051
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8021
Number of HSP's gapped (non-prelim): 30
length of query: 800
length of database: 441,732,993
effective HSP length: 20
effective length of query: 780
effective length of database: 433,880,813
effective search space: 338427034140
effective search space used: 338427034140
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)