BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2192420.2.1
         (738 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AW775402.1|AW775402  EST334467 DSIL Medicago truncatula c...    50   3e-004
gb|AL371281.1|AL371281  MtBA43A08R1 MtBA Medicago truncatula...    50   3e-004
gb|AW696218.2|AW696218  NF103H03ST1F1031 Developing stem Med...    50   3e-004
gb|BI265754.1|BI265754  NF093F09IN1F1079 Insect herbivory Me...    50   3e-004
gb|CA922580.1|CA922580  EST640298 MTUS Medicago truncatula c...    50   3e-004
gb|CB893142.1|CB893142  EST645934 HOGA Medicago truncatula c...    50   3e-004

>gb|AW775402.1|AW775402 EST334467 DSIL Medicago truncatula cDNA clone pDSIL-1N9, mRNA
           sequence
          Length = 635

 Score = 50.1 bits (25), Expect = 3e-004
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 82  aagcgtatttatattccacttccagattt 110
           |||||||||||||||||||| ||||||||
Sbjct: 532 aagcgtatttatattccactaccagattt 560



>gb|AL371281.1|AL371281 MtBA43A08R1 MtBA Medicago truncatula cDNA clone MtBA43A08 T7, mRNA
           sequence
          Length = 550

 Score = 50.1 bits (25), Expect = 3e-004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 82  aagcgtatttatattccacttccagattt 110
           |||||||||||||||||||| ||||||||
Sbjct: 161 aagcgtatttatattccactaccagattt 133



>gb|AW696218.2|AW696218 NF103H03ST1F1031 Developing stem Medicago truncatula cDNA clone
           NF103H03ST 5', mRNA sequence
          Length = 577

 Score = 50.1 bits (25), Expect = 3e-004
 Identities = 61/73 (83%)
 Strand = Plus / Plus

                                                                       
Query: 26  tggctgctacaaattttccatgggatattgatgaggcactgaggcgaaggctggagaagc 85
           |||| ||||| || || |||||||| || ||||||||||| ||| |||||||||| ||| 
Sbjct: 496 tggcagctactaacttcccatgggacatagatgaggcactaaggagaaggctggaaaaga 555

                        
Query: 86  gtatttatattcc 98
           | || ||||||||
Sbjct: 556 gaatatatattcc 568



>gb|BI265754.1|BI265754 NF093F09IN1F1079 Insect herbivory Medicago truncatula cDNA clone
           NF093F09IN 5', mRNA sequence
          Length = 622

 Score = 50.1 bits (25), Expect = 3e-004
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 82  aagcgtatttatattccacttccagattt 110
           |||||||||||||||||||| ||||||||
Sbjct: 540 aagcgtatttatattccactaccagattt 568



>gb|CA922580.1|CA922580 EST640298 MTUS Medicago truncatula cDNA clone MTUS-55F1, mRNA
           sequence
          Length = 771

 Score = 50.1 bits (25), Expect = 3e-004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 82  aagcgtatttatattccacttccagattt 110
           |||||||||||||||||||| ||||||||
Sbjct: 589 aagcgtatttatattccactaccagattt 561



>gb|CB893142.1|CB893142 EST645934 HOGA Medicago truncatula cDNA clone HOGA-26N16, mRNA
           sequence
          Length = 611

 Score = 50.1 bits (25), Expect = 3e-004
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 82  aagcgtatttatattccacttccagattt 110
           |||||||||||||||||||| ||||||||
Sbjct: 500 aagcgtatttatattccactaccagattt 528



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 160,950
Number of Sequences: 392609
Number of extensions: 160950
Number of successful extensions: 12486
Number of sequences better than  0.5: 6
Number of HSP's better than  0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12480
Number of HSP's gapped (non-prelim): 6
length of query: 738
length of database: 441,732,993
effective HSP length: 19
effective length of query: 719
effective length of database: 434,273,422
effective search space: 312242590418
effective search space used: 312242590418
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)