BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2161072.2.3
         (885 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AW573905.1|AW573905  EST316496 GVN Medicago truncatula cD...    46   0.005
gb|BF649979.1|BF649979  NF083H09EC1F1078 Elicited cell cultu...    46   0.005
gb|AC129092.13|  Medicago truncatula clone mth2-17n16, compl...    44   0.020
gb|AC124959.11|  Medicago truncatula clone mth2-23l11, compl...    42   0.078

>gb|AW573905.1|AW573905 EST316496 GVN Medicago truncatula cDNA clone pGVN-49B10, mRNA
           sequence
          Length = 601

 Score = 46.1 bits (23), Expect = 0.005
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 590 ggaggaggagaagaggaagagga 612
           |||||||||||||||||||||||
Sbjct: 280 ggaggaggagaagaggaagagga 302



>gb|BF649979.1|BF649979 NF083H09EC1F1078 Elicited cell culture Medicago truncatula cDNA
           clone NF083H09EC 5', mRNA sequence
          Length = 662

 Score = 46.1 bits (23), Expect = 0.005
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 590 ggaggaggagaagaggaagagga 612
           |||||||||||||||||||||||
Sbjct: 641 ggaggaggagaagaggaagagga 619



>gb|AC129092.13| Medicago truncatula clone mth2-17n16, complete sequence
          Length = 104281

 Score = 44.1 bits (22), Expect = 0.020
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 591   gaggaggagaagaggaagaggaggaa 616
             |||||||||||||||| |||||||||
Sbjct: 51018 gaggaggagaagaggaggaggaggaa 51043



>gb|AC124959.11| Medicago truncatula clone mth2-23l11, complete sequence
          Length = 125883

 Score = 42.1 bits (21), Expect = 0.078
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 614   gaaaatacatgaaaaataaaa 634
             |||||||||||||||||||||
Sbjct: 96190 gaaaatacatgaaaaataaaa 96170



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 184,165
Number of Sequences: 392609
Number of extensions: 184165
Number of successful extensions: 18352
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18339
Number of HSP's gapped (non-prelim): 13
length of query: 885
length of database: 441,732,993
effective HSP length: 20
effective length of query: 865
effective length of database: 433,880,813
effective search space: 375306903245
effective search space used: 375306903245
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)