BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2161072.2.1
         (1197 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BF642258.1|BF642258  NF066A10IN1F1072 Insect herbivory Me...    42   0.11 
gb|AW693320.2|AW693320  NF062H02ST1F1000 Developing stem Med...    42   0.11 
gb|BI267795.1|BI267795  NF111D09IN1F1078 Insect herbivory Me...    42   0.11 
gb|BQ141827.1|BQ141827  NF032G05IN1F1039 Insect herbivory Me...    42   0.11 
gb|CX525199.1|CX525199  s13dNF20F02AT027_479032 Aphid-Infect...    42   0.11 

>gb|BF642258.1|BF642258 NF066A10IN1F1072 Insect herbivory Medicago truncatula cDNA clone
           NF066A10IN 5', mRNA sequence
          Length = 647

 Score = 42.1 bits (21), Expect = 0.11
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 172 ctacacaaaagaagaaagagc 192
           |||||||||||||||||||||
Sbjct: 76  ctacacaaaagaagaaagagc 96



>gb|AW693320.2|AW693320 NF062H02ST1F1000 Developing stem Medicago truncatula cDNA clone
           NF062H02ST 5', mRNA sequence
          Length = 384

 Score = 42.1 bits (21), Expect = 0.11
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 172 ctacacaaaagaagaaagagc 192
           |||||||||||||||||||||
Sbjct: 85  ctacacaaaagaagaaagagc 105



>gb|BI267795.1|BI267795 NF111D09IN1F1078 Insect herbivory Medicago truncatula cDNA clone
           NF111D09IN 5', mRNA sequence
          Length = 569

 Score = 42.1 bits (21), Expect = 0.11
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 172 ctacacaaaagaagaaagagc 192
           |||||||||||||||||||||
Sbjct: 61  ctacacaaaagaagaaagagc 81



>gb|BQ141827.1|BQ141827 NF032G05IN1F1039 Insect herbivory Medicago truncatula cDNA clone
           NF032G05IN 5', mRNA sequence
          Length = 578

 Score = 42.1 bits (21), Expect = 0.11
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 172 ctacacaaaagaagaaagagc 192
           |||||||||||||||||||||
Sbjct: 108 ctacacaaaagaagaaagagc 128



>gb|CX525199.1|CX525199 s13dNF20F02AT027_479032 Aphid-Infected Shoots Medicago truncatula
           cDNA, mRNA sequence
          Length = 570

 Score = 42.1 bits (21), Expect = 0.11
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 172 ctacacaaaagaagaaagagc 192
           |||||||||||||||||||||
Sbjct: 175 ctacacaaaagaagaaagagc 195



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 165,557
Number of Sequences: 392609
Number of extensions: 165557
Number of successful extensions: 12968
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12963
Number of HSP's gapped (non-prelim): 5
length of query: 1197
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1177
effective length of database: 433,880,813
effective search space: 510677716901
effective search space used: 510677716901
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)