BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805013.2.2
(964 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|CR940307.5| M.truncatula DNA sequence from clone MTH2-2... 68 1e-009
emb|CR478966.1| mth2-188J6FM1 BAC end, cultivar Jemalong A1... 60 4e-007
emb|CR481263.1| mth2-193J5FM1 BAC end, cultivar Jemalong A1... 60 4e-007
gb|BQ150109.1|BQ150109 NF008A04LF1F1024 Developing leaf Med... 42 0.086
gb|AW683166.2|AW683166 NF008D04LF1F1041 Developing leaf Med... 40 0.34
>emb|CR940307.5| M.truncatula DNA sequence from clone MTH2-21G21 on chromosome 3,
complete sequence
Length = 115223
Score = 67.9 bits (34), Expect = 1e-009
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 166 ggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaaggag 225
|||||||| || ||||||||||||||||| ||||| ||||||||||| || || ||||||
Sbjct: 47596 ggcaagcttcgttacgccaacaactccaattacaaaaacgacaccatcattcgtaaggag 47655
Query: 226 gt 227
||
Sbjct: 47656 gt 47657
>emb|CR478966.1| mth2-188J6FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 592
Score = 60.0 bits (30), Expect = 4e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 178 tacgccaacaactccaactacaagaacgacaccatgatccgcaaggaggt 227
||||||||||||||||| ||||| ||||||||||| || || ||||||||
Sbjct: 9 tacgccaacaactccaattacaaaaacgacaccatcattcgtaaggaggt 58
>emb|CR481263.1| mth2-193J5FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 615
Score = 60.0 bits (30), Expect = 4e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 178 tacgccaacaactccaactacaagaacgacaccatgatccgcaaggaggt 227
||||||||||||||||| ||||| ||||||||||| || || ||||||||
Sbjct: 9 tacgccaacaactccaattacaaaaacgacaccatcattcgtaaggaggt 58
>gb|BQ150109.1|BQ150109 NF008A04LF1F1024 Developing leaf Medicago truncatula cDNA clone
NF008A04LF 5', mRNA sequence
Length = 796
Score = 42.1 bits (21), Expect = 0.086
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aattcggcacgaggggaagcc 21
|||||||||||||||||||||
Sbjct: 128 aattcggcacgaggggaagcc 148
>gb|AW683166.2|AW683166 NF008D04LF1F1041 Developing leaf Medicago truncatula cDNA clone
NF008D04LF 5', mRNA sequence
Length = 689
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 aattcggcacgaggggaagc 20
||||||||||||||||||||
Sbjct: 104 aattcggcacgaggggaagc 123
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 164,707
Number of Sequences: 392609
Number of extensions: 164707
Number of successful extensions: 23519
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23506
Number of HSP's gapped (non-prelim): 13
length of query: 964
length of database: 441,732,993
effective HSP length: 20
effective length of query: 944
effective length of database: 433,880,813
effective search space: 409583487472
effective search space used: 409583487472
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)