BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1738863.2.3
(730 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW328884.2|AW328884 N200076e rootphos(-) Medicago trunca... 40 0.25
gb|AW775427.1|AW775427 EST334492 DSIL Medicago truncatula c... 40 0.25
gb|AW981469.1|AW981469 EST392622 DSIL Medicago truncatula c... 40 0.25
gb|AL372628.1|AL372628 MtBA52D06R1 MtBA Medicago truncatula... 40 0.25
gb|BF519576.1|BF519576 EST457040 DSIL Medicago truncatula c... 40 0.25
gb|BF520562.1|BF520562 EST458035 DSIL Medicago truncatula c... 40 0.25
gb|AW695984.2|AW695984 NF100F06ST1F1058 Developing stem Med... 40 0.25
gb|BG580408.1|BG580408 EST482133 GVN Medicago truncatula cD... 40 0.25
gb|BG588743.1|BG588743 EST490552 MHRP- Medicago truncatula ... 40 0.25
gb|BI269990.1|BI269990 NF003G04FL1F1036 Developing flower M... 40 0.25
gb|BQ146907.1|BQ146907 NF029D11FL1F1093 Developing flower M... 40 0.25
gb|BQ148867.1|BQ148867 NF083D07FL1F1061 Developing flower M... 40 0.25
gb|BQ150333.1|BQ150333 NF019B02LF1F1015 Developing leaf Med... 40 0.25
gb|BQ156139.1|BQ156139 NF089F01IR1F1015 Irradiated Medicago... 40 0.25
gb|AJ496879.1|AJ496879 AJ496879 MTFLOW Medicago truncatula ... 40 0.25
gb|AJ497591.1|AJ497591 AJ497591 MTFLOW Medicago truncatula ... 40 0.25
gb|AJ497725.1|AJ497725 AJ497725 MTFLOW Medicago truncatula ... 40 0.25
gb|AJ497833.1|AJ497833 AJ497833 MTFLOW Medicago truncatula ... 40 0.25
gb|CA990748.1|CA990748 EST644256 GESD Medicago truncatula c... 40 0.25
gb|AJ846233.1|AJ846233 AJ846233 MtSC4 Medicago truncatula c... 40 0.25
gb|CX516684.1|CX516684 s13dNF03E05VI039_390377 Virus-Infect... 40 0.25
gb|CX519199.1|CX519199 s13dNF42D11VI094_442450 Virus-Infect... 40 0.25
gb|CX520166.1|CX520166 s13dNF41E02VI007_444384 Virus-Infect... 40 0.25
gb|CX520872.1|CX520872 s13dNF58B05VI042_449530 Virus-Infect... 40 0.25
gb|CX521616.1|CX521616 s13dNF1KC02VI006_469036 Virus-Infect... 40 0.25
gb|CX521859.1|CX521859 s13dNF1FB04VI029_469522 Virus-Infect... 40 0.25
gb|CX522755.1|CX522755 s13dNF90G06VI052_471314 Virus-Infect... 40 0.25
gb|CX540286.1|CX540286 s13dNF68C05GS037_463846 Germinating ... 40 0.25
gb|AC153121.14| Medicago truncatula clone mth2-80o14, WORKI... 40 0.25
gb|AC144404.34| Medicago truncatula clone mth2-19f21, WORKI... 40 0.25
>gb|AW328884.2|AW328884 N200076e rootphos(-) Medicago truncatula cDNA clone MHRP-13G11,
mRNA sequence
Length = 503
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 394 atcgacatgagaggatgtcg 413
||||||||||||||||||||
Sbjct: 459 atcgacatgagaggatgtcg 478
>gb|AW775427.1|AW775427 EST334492 DSIL Medicago truncatula cDNA clone pDSIL-1D14, mRNA
sequence
Length = 621
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 394 atcgacatgagaggatgtcg 413
||||||||||||||||||||
Sbjct: 536 atcgacatgagaggatgtcg 555
>gb|AW981469.1|AW981469 EST392622 DSIL Medicago truncatula cDNA clone pDSIL-16N5, mRNA
sequence
Length = 655
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 394 atcgacatgagaggatgtcg 413
||||||||||||||||||||
Sbjct: 611 atcgacatgagaggatgtcg 630
>gb|AL372628.1|AL372628 MtBA52D06R1 MtBA Medicago truncatula cDNA clone MtBA52D06 T7, mRNA
sequence
Length = 464
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 394 atcgacatgagaggatgtcg 413
||||||||||||||||||||
Sbjct: 174 atcgacatgagaggatgtcg 193
>gb|BF519576.1|BF519576 EST457040 DSIL Medicago truncatula cDNA clone pDSIL-21K1, mRNA
sequence
Length = 518
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 394 atcgacatgagaggatgtcg 413
||||||||||||||||||||
Sbjct: 433 atcgacatgagaggatgtcg 452
>gb|BF520562.1|BF520562 EST458035 DSIL Medicago truncatula cDNA clone pDSIL-24P9, mRNA
sequence
Length = 253
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 394 atcgacatgagaggatgtcg 413
||||||||||||||||||||
Sbjct: 182 atcgacatgagaggatgtcg 201
>gb|AW695984.2|AW695984 NF100F06ST1F1058 Developing stem Medicago truncatula cDNA clone
NF100F06ST 5', mRNA sequence
Length = 592
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 394 atcgacatgagaggatgtcg 413
||||||||||||||||||||
Sbjct: 242 atcgacatgagaggatgtcg 223
>gb|BG580408.1|BG580408 EST482133 GVN Medicago truncatula cDNA clone pGVN-57G24 5' end,
mRNA sequence
Length = 386
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 394 atcgacatgagaggatgtcg 413
||||||||||||||||||||
Sbjct: 310 atcgacatgagaggatgtcg 329
>gb|BG588743.1|BG588743 EST490552 MHRP- Medicago truncatula cDNA clone pMHRP-57K4, mRNA
sequence
Length = 535
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 394 atcgacatgagaggatgtcg 413
||||||||||||||||||||
Sbjct: 279 atcgacatgagaggatgtcg 298
>gb|BI269990.1|BI269990 NF003G04FL1F1036 Developing flower Medicago truncatula cDNA clone
NF003G04FL 5', mRNA sequence
Length = 515
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 394 atcgacatgagaggatgtcg 413
||||||||||||||||||||
Sbjct: 327 atcgacatgagaggatgtcg 346
>gb|BQ146907.1|BQ146907 NF029D11FL1F1093 Developing flower Medicago truncatula cDNA clone
NF029D11FL 5', mRNA sequence
Length = 671
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 394 atcgacatgagaggatgtcg 413
||||||||||||||||||||
Sbjct: 403 atcgacatgagaggatgtcg 422
>gb|BQ148867.1|BQ148867 NF083D07FL1F1061 Developing flower Medicago truncatula cDNA clone
NF083D07FL 5', mRNA sequence
Length = 697
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 394 atcgacatgagaggatgtcg 413
||||||||||||||||||||
Sbjct: 522 atcgacatgagaggatgtcg 541
>gb|BQ150333.1|BQ150333 NF019B02LF1F1015 Developing leaf Medicago truncatula cDNA clone
NF019B02LF 5', mRNA sequence
Length = 804
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 394 atcgacatgagaggatgtcg 413
||||||||||||||||||||
Sbjct: 163 atcgacatgagaggatgtcg 182
>gb|BQ156139.1|BQ156139 NF089F01IR1F1015 Irradiated Medicago truncatula cDNA clone
NF089F01IR 5', mRNA sequence
Length = 511
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 394 atcgacatgagaggatgtcg 413
||||||||||||||||||||
Sbjct: 232 atcgacatgagaggatgtcg 251
>gb|AJ496879.1|AJ496879 AJ496879 MTFLOW Medicago truncatula cDNA clone mt--abc955101b09,
mRNA sequence
Length = 527
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 394 atcgacatgagaggatgtcg 413
||||||||||||||||||||
Sbjct: 357 atcgacatgagaggatgtcg 376
>gb|AJ497591.1|AJ497591 AJ497591 MTFLOW Medicago truncatula cDNA clone mt--abc955111d01,
mRNA sequence
Length = 429
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 394 atcgacatgagaggatgtcg 413
||||||||||||||||||||
Sbjct: 196 atcgacatgagaggatgtcg 215
>gb|AJ497725.1|AJ497725 AJ497725 MTFLOW Medicago truncatula cDNA clone mt--abc955113c10,
mRNA sequence
Length = 371
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 394 atcgacatgagaggatgtcg 413
||||||||||||||||||||
Sbjct: 279 atcgacatgagaggatgtcg 298
>gb|AJ497833.1|AJ497833 AJ497833 MTFLOW Medicago truncatula cDNA clone mt--abc955115a06,
mRNA sequence
Length = 589
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 394 atcgacatgagaggatgtcg 413
||||||||||||||||||||
Sbjct: 393 atcgacatgagaggatgtcg 412
>gb|CA990748.1|CA990748 EST644256 GESD Medicago truncatula cDNA clone GESD-29B22, mRNA
sequence
Length = 661
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 394 atcgacatgagaggatgtcg 413
||||||||||||||||||||
Sbjct: 475 atcgacatgagaggatgtcg 494
>gb|AJ846233.1|AJ846233 AJ846233 MtSC4 Medicago truncatula cDNA clone MtC412N04N1, mRNA
sequence
Length = 352
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 394 atcgacatgagaggatgtcg 413
||||||||||||||||||||
Sbjct: 104 atcgacatgagaggatgtcg 123
>gb|CX516684.1|CX516684 s13dNF03E05VI039_390377 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 540
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 394 atcgacatgagaggatgtcg 413
||||||||||||||||||||
Sbjct: 444 atcgacatgagaggatgtcg 463
>gb|CX519199.1|CX519199 s13dNF42D11VI094_442450 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 583
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 394 atcgacatgagaggatgtcg 413
||||||||||||||||||||
Sbjct: 399 atcgacatgagaggatgtcg 418
>gb|CX520166.1|CX520166 s13dNF41E02VI007_444384 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 459
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 394 atcgacatgagaggatgtcg 413
||||||||||||||||||||
Sbjct: 336 atcgacatgagaggatgtcg 355
>gb|CX520872.1|CX520872 s13dNF58B05VI042_449530 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 571
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 394 atcgacatgagaggatgtcg 413
||||||||||||||||||||
Sbjct: 528 atcgacatgagaggatgtcg 547
>gb|CX521616.1|CX521616 s13dNF1KC02VI006_469036 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 452
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 394 atcgacatgagaggatgtcg 413
||||||||||||||||||||
Sbjct: 330 atcgacatgagaggatgtcg 349
>gb|CX521859.1|CX521859 s13dNF1FB04VI029_469522 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 516
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 394 atcgacatgagaggatgtcg 413
||||||||||||||||||||
Sbjct: 472 atcgacatgagaggatgtcg 491
>gb|CX522755.1|CX522755 s13dNF90G06VI052_471314 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 471
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 394 atcgacatgagaggatgtcg 413
||||||||||||||||||||
Sbjct: 427 atcgacatgagaggatgtcg 446
>gb|CX540286.1|CX540286 s13dNF68C05GS037_463846 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 555
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 394 atcgacatgagaggatgtcg 413
||||||||||||||||||||
Sbjct: 328 atcgacatgagaggatgtcg 347
>gb|AC153121.14| Medicago truncatula clone mth2-80o14, WORKING DRAFT SEQUENCE, 2 ordered
pieces
Length = 114814
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 394 atcgacatgagaggatgtcg 413
||||||||||||||||||||
Sbjct: 111911 atcgacatgagaggatgtcg 111892
>gb|AC144404.34| Medicago truncatula clone mth2-19f21, WORKING DRAFT SEQUENCE, 14
unordered pieces
Length = 268915
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 394 atcgacatgagaggatgtcg 413
||||||||||||||||||||
Sbjct: 5341 atcgacatgagaggatgtcg 5322
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 159,118
Number of Sequences: 392609
Number of extensions: 159118
Number of successful extensions: 11830
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11791
Number of HSP's gapped (non-prelim): 39
length of query: 730
length of database: 441,732,993
effective HSP length: 19
effective length of query: 711
effective length of database: 434,273,422
effective search space: 308768403042
effective search space used: 308768403042
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)