BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 1724812.2.1
         (804 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AC146331.35|  Medicago truncatula clone mth2-7h18, comple...    46   0.005
emb|CR347054.1|  mte1-80B16FM1 BAC end, cultivar Jemalong A1...    40   0.28 
emb|CR347100.1|  mte1-80F22FM1 BAC end, cultivar Jemalong A1...    40   0.28 
gb|BG450627.1|BG450627  NF036H07DT1F1064 Drought Medicago tr...    40   0.28 
gb|AC128638.34|  Medicago truncatula clone mth2-36h10, compl...    40   0.28 

>gb|AC146331.35| Medicago truncatula clone mth2-7h18, complete sequence
          Length = 138838

 Score = 46.1 bits (23), Expect = 0.005
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 745    agaacttgtttggatgcacaatgtaat 771
              |||||||||||||||||||||| ||||
Sbjct: 105839 agaacttgtttggatgcacaatttaat 105813



>emb|CR347054.1| mte1-80B16FM1 BAC end, cultivar Jemalong A17 of Medicago
           truncatula, genomic survey sequence
          Length = 693

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 558 tggttggtattgttaccgtc 577
           ||||||||||||||||||||
Sbjct: 663 tggttggtattgttaccgtc 644



>emb|CR347100.1| mte1-80F22FM1 BAC end, cultivar Jemalong A17 of Medicago
           truncatula, genomic survey sequence
          Length = 628

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 558 tggttggtattgttaccgtc 577
           ||||||||||||||||||||
Sbjct: 413 tggttggtattgttaccgtc 432



>gb|BG450627.1|BG450627 NF036H07DT1F1064 Drought Medicago truncatula cDNA clone NF036H07DT
           5', mRNA sequence
          Length = 406

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 738 ttttttaagaacttgtttgg 757
           ||||||||||||||||||||
Sbjct: 395 ttttttaagaacttgtttgg 376



>gb|AC128638.34| Medicago truncatula clone mth2-36h10, complete sequence
          Length = 110895

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 558   tggttggtattgttaccgtc 577
             ||||||||||||||||||||
Sbjct: 95860 tggttggtattgttaccgtc 95841



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 100,944
Number of Sequences: 392609
Number of extensions: 100944
Number of successful extensions: 6765
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6756
Number of HSP's gapped (non-prelim): 9
length of query: 804
length of database: 441,732,993
effective HSP length: 20
effective length of query: 784
effective length of database: 433,880,813
effective search space: 340162557392
effective search space used: 340162557392
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)