BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716394.2.1
(1074 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|CR502313.1| mth2-179M24FM1 BAC end, cultivar Jemalong A... 44 0.024
gb|AW688349.1|AW688349 NF006D04ST1F1000 Developing stem Med... 44 0.024
gb|AW736342.1|AW736342 EST332261 KV3 Medicago truncatula cD... 44 0.024
gb|BF003475.1|BF003475 EST431973 KV1 Medicago truncatula cD... 44 0.024
gb|BF631836.1|BF631836 NF026E01DT1F1004 Drought Medicago tr... 44 0.024
gb|CB893280.1|CB893280 EST646072 HOGA Medicago truncatula c... 44 0.024
emb|CT009492.5| M.truncatula DNA sequence from clone MTH2-9... 44 0.024
gb|AJ500807.1|AJ500807 AJ500807 MTGIM Medicago truncatula c... 42 0.096
gb|DW016211.1|DW016211 EST1225172 MTY Medicago truncatula c... 42 0.096
gb|BE124800.1|BE124800 EST393835 GVN Medicago truncatula cD... 40 0.38
gb|BF648273.1|BF648273 NF041H03EC1F1031 Elicited cell cultu... 40 0.38
gb|AC146747.7| Medicago truncatula clone mth2-14h5, complet... 40 0.38
gb|AC146790.16| Medicago truncatula clone mth2-123b21, comp... 40 0.38
emb|CT030245.4| Medicago truncatula chromosome 3 clone MTH2... 40 0.38
>emb|CR502313.1| mth2-179M24FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 756
Score = 44.1 bits (22), Expect = 0.024
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 988 aggaggaggaggaggaagacga 1009
||||||||||||||||||||||
Sbjct: 483 aggaggaggaggaggaagacga 504
>gb|AW688349.1|AW688349 NF006D04ST1F1000 Developing stem Medicago truncatula cDNA clone
NF006D04ST 5', mRNA sequence
Length = 674
Score = 44.1 bits (22), Expect = 0.024
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 988 aggaggaggaggaggaagacga 1009
||||||||||||||||||||||
Sbjct: 442 aggaggaggaggaggaagacga 421
>gb|AW736342.1|AW736342 EST332261 KV3 Medicago truncatula cDNA clone pKV3-12A20, mRNA
sequence
Length = 621
Score = 44.1 bits (22), Expect = 0.024
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 988 aggaggaggaggaggaagacga 1009
||||||||||||||||||||||
Sbjct: 541 aggaggaggaggaggaagacga 520
>gb|BF003475.1|BF003475 EST431973 KV1 Medicago truncatula cDNA clone pKV1-5P24, mRNA sequence
Length = 709
Score = 44.1 bits (22), Expect = 0.024
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 988 aggaggaggaggaggaagacga 1009
||||||||||||||||||||||
Sbjct: 26 aggaggaggaggaggaagacga 5
>gb|BF631836.1|BF631836 NF026E01DT1F1004 Drought Medicago truncatula cDNA clone NF026E01DT
5', mRNA sequence
Length = 672
Score = 44.1 bits (22), Expect = 0.024
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 988 aggaggaggaggaggaagacga 1009
||||||||||||||||||||||
Sbjct: 395 aggaggaggaggaggaagacga 374
>gb|CB893280.1|CB893280 EST646072 HOGA Medicago truncatula cDNA clone HOGA-27I14, mRNA
sequence
Length = 655
Score = 44.1 bits (22), Expect = 0.024
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 988 aggaggaggaggaggaagacga 1009
||||||||||||||||||||||
Sbjct: 141 aggaggaggaggaggaagacga 120
>emb|CT009492.5| M.truncatula DNA sequence from clone MTH2-93A21 on chromosome 3,
complete sequence
Length = 122557
Score = 44.1 bits (22), Expect = 0.024
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 988 aggaggaggaggaggaagacga 1009
||||||||||||||||||||||
Sbjct: 59622 aggaggaggaggaggaagacga 59601
>gb|AJ500807.1|AJ500807 AJ500807 MTGIM Medicago truncatula cDNA clone mtgmacc120020d09, mRNA
sequence
Length = 529
Score = 42.1 bits (21), Expect = 0.096
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 990 gaggaggaggaggaagacgag 1010
|||||||||||||||||||||
Sbjct: 104 gaggaggaggaggaagacgag 84
>gb|DW016211.1|DW016211 EST1225172 MTY Medicago truncatula cDNA clone MTYAE43, mRNA sequence
Length = 805
Score = 42.1 bits (21), Expect = 0.096
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 990 gaggaggaggaggaagacgag 1010
|||||||||||||||||||||
Sbjct: 489 gaggaggaggaggaagacgag 509
>gb|BE124800.1|BE124800 EST393835 GVN Medicago truncatula cDNA clone pGVN-67P15, mRNA
sequence
Length = 500
Score = 40.1 bits (20), Expect = 0.38
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 990 gaggaggaggaggaagacga 1009
||||||||||||||||||||
Sbjct: 240 gaggaggaggaggaagacga 221
>gb|BF648273.1|BF648273 NF041H03EC1F1031 Elicited cell culture Medicago truncatula cDNA clone
NF041H03EC 5', mRNA sequence
Length = 643
Score = 40.1 bits (20), Expect = 0.38
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 990 gaggaggaggaggaagacga 1009
||||||||||||||||||||
Sbjct: 488 gaggaggaggaggaagacga 469
>gb|AC146747.7| Medicago truncatula clone mth2-14h5, complete sequence
Length = 129204
Score = 40.1 bits (20), Expect = 0.38
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 986 caaggaggaggaggaggaagacga 1009
|||| |||||||||||||||||||
Sbjct: 65074 caagaaggaggaggaggaagacga 65097
>gb|AC146790.16| Medicago truncatula clone mth2-123b21, complete sequence
Length = 114449
Score = 40.1 bits (20), Expect = 0.38
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 990 gaggaggaggaggaagacga 1009
||||||||||||||||||||
Sbjct: 35816 gaggaggaggaggaagacga 35797
>emb|CT030245.4| Medicago truncatula chromosome 3 clone MTH2-59B18, WORKING DRAFT
SEQUENCE, 12 unordered pieces
Length = 170880
Score = 40.1 bits (20), Expect = 0.38
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 987 aaggaggaggaggaggaaga 1006
||||||||||||||||||||
Sbjct: 119129 aaggaggaggaggaggaaga 119110
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 210,373
Number of Sequences: 392609
Number of extensions: 210373
Number of successful extensions: 17727
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17654
Number of HSP's gapped (non-prelim): 46
length of query: 1074
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1054
effective length of database: 433,880,813
effective search space: 457310376902
effective search space used: 457310376902
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)