BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 1716323.2.1
         (724 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AW329094.2|AW329094  N200300e rootphos(-) Medicago trunca...    56   4e-006
gb|BG588349.1|BG588349  EST490158 MHRP- Medicago truncatula ...    56   4e-006

>gb|AW329094.2|AW329094 N200300e rootphos(-) Medicago truncatula cDNA clone MHRP-16B12,
           mRNA sequence
          Length = 595

 Score = 56.0 bits (28), Expect = 4e-006
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                   
Query: 198 gatcggttgaaagagttgataaagtacaagggatatcaggtacctcctgccgaact 253
           ||||| ||||||||| | || |||||||||||||||||||| ||||| || |||||
Sbjct: 371 gatcgtttgaaagagctcattaagtacaagggatatcaggtccctccagcagaact 426



>gb|BG588349.1|BG588349 EST490158 MHRP- Medicago truncatula cDNA clone pMHRP-47N9, mRNA
           sequence
          Length = 609

 Score = 56.0 bits (28), Expect = 4e-006
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                   
Query: 198 gatcggttgaaagagttgataaagtacaagggatatcaggtacctcctgccgaact 253
           ||||| ||||||||| | || |||||||||||||||||||| ||||| || |||||
Sbjct: 199 gatcgtttgaaagagctcattaagtacaagggatatcaggtccctccagcagaact 254



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 180,235
Number of Sequences: 392609
Number of extensions: 180235
Number of successful extensions: 14629
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14627
Number of HSP's gapped (non-prelim): 2
length of query: 724
length of database: 441,732,993
effective HSP length: 19
effective length of query: 705
effective length of database: 434,273,422
effective search space: 306162762510
effective search space used: 306162762510
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)