BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 131572.2.6
         (1100 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CR295621.1|  mte1-12A11FM1 BAC end, cultivar Jemalong A1...    42   0.098
emb|CR305226.1|  mte1-24D16FM2 BAC end, cultivar Jemalong A1...    42   0.098
gb|AC147407.10|  Medicago truncatula clone mth2-159b14, comp...    42   0.098
gb|AC146561.22|  Medicago truncatula clone mth2-12j18, compl...    40   0.39 
emb|CT573215.1|  Medicago truncatula chromosome 5 clone mth2...    40   0.39 

>emb|CR295621.1| mte1-12A11FM1 BAC end, cultivar Jemalong A17 of Medicago
           truncatula, genomic survey sequence
          Length = 887

 Score = 42.1 bits (21), Expect = 0.098
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 801 atatatatttacatacatatgtatg 825
           |||||||| ||||||||||||||||
Sbjct: 399 atatatatatacatacatatgtatg 423



>emb|CR305226.1| mte1-24D16FM2 BAC end, cultivar Jemalong A17 of Medicago
           truncatula, genomic survey sequence
          Length = 666

 Score = 42.1 bits (21), Expect = 0.098
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 801 atatatatttacatacatatgtatg 825
           |||||||| ||||||||||||||||
Sbjct: 394 atatatatatacatacatatgtatg 418



>gb|AC147407.10| Medicago truncatula clone mth2-159b14, complete sequence
          Length = 115857

 Score = 42.1 bits (21), Expect = 0.098
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 991   tgttttaagtgatatatatttcttg 1015
             ||||||||||| |||||||||||||
Sbjct: 19686 tgttttaagtggtatatatttcttg 19662



>gb|AC146561.22| Medicago truncatula clone mth2-12j18, complete sequence
          Length = 135940

 Score = 40.1 bits (20), Expect = 0.39
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 1035   gaatatatgtttttcataattaaa 1058
              ||||||||||| ||||||||||||
Sbjct: 124262 gaatatatgttcttcataattaaa 124285



>emb|CT573215.1| Medicago truncatula chromosome 5 clone mth2-51h23, WORKING DRAFT SEQUENCE
          Length = 122522

 Score = 40.1 bits (20), Expect = 0.39
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 1035   gaatatatgtttttcataattaaa 1058
              ||||||||||| ||||||||||||
Sbjct: 110894 gaatatatgttcttcataattaaa 110871



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 250,988
Number of Sequences: 392609
Number of extensions: 250988
Number of successful extensions: 17953
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17929
Number of HSP's gapped (non-prelim): 24
length of query: 1100
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1080
effective length of database: 433,880,813
effective search space: 468591278040
effective search space used: 468591278040
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)