BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131555.2.1
(1236 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ500111.1|AJ500111 AJ500111 MTGIM Medicago truncatula c... 44 0.028
gb|AJ500181.1|AJ500181 AJ500181 MTGIM Medicago truncatula c... 44 0.028
gb|AJ500539.1|AJ500539 AJ500539 MTGIM Medicago truncatula c... 44 0.028
gb|AJ499470.1|AJ499470 AJ499470 MTGIM Medicago truncatula c... 44 0.028
gb|AJ500217.1|AJ500217 AJ500217 MTGIM Medicago truncatula c... 42 0.11
gb|AJ500301.1|AJ500301 AJ500301 MTGIM Medicago truncatula c... 42 0.11
gb|AJ500566.1|AJ500566 AJ500566 MTGIM Medicago truncatula c... 42 0.11
gb|AJ500711.1|AJ500711 AJ500711 MTGIM Medicago truncatula c... 42 0.11
gb|AJ499175.1|AJ499175 AJ499175 MTGIM Medicago truncatula c... 42 0.11
gb|AJ621860.1|AJ621860 AJ621860 Medicago truncatula J5 root... 42 0.11
gb|AJ864417.1|AJ864417 AJ864417 Medicago truncatula cv. J5 ... 42 0.11
gb|AL375508.1|AL375508 MtBB15B08R1 MtBB Medicago truncatula... 40 0.44
gb|AJ500088.1|AJ500088 AJ500088 MTGIM Medicago truncatula c... 40 0.44
gb|AJ500185.1|AJ500185 AJ500185 MTGIM Medicago truncatula c... 40 0.44
gb|AJ500456.1|AJ500456 AJ500456 MTGIM Medicago truncatula c... 40 0.44
>gb|AJ500111.1|AJ500111 AJ500111 MTGIM Medicago truncatula cDNA clone mtgmacc120012g12, mRNA
sequence
Length = 398
Score = 44.1 bits (22), Expect = 0.028
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1212 cgcgtacctgcccgggcggccg 1233
||||||||||||||||||||||
Sbjct: 376 cgcgtacctgcccgggcggccg 397
>gb|AJ500181.1|AJ500181 AJ500181 MTGIM Medicago truncatula cDNA clone mtgmacc120013f03, mRNA
sequence
Length = 614
Score = 44.1 bits (22), Expect = 0.028
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1214 cgtacctgcccgggcggccgct 1235
||||||||||||||||||||||
Sbjct: 203 cgtacctgcccgggcggccgct 224
>gb|AJ500539.1|AJ500539 AJ500539 MTGIM Medicago truncatula cDNA clone mtgmacc120017e07, mRNA
sequence
Length = 489
Score = 44.1 bits (22), Expect = 0.028
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1212 cgcgtacctgcccgggcggccg 1233
||||||||||||||||||||||
Sbjct: 25 cgcgtacctgcccgggcggccg 4
>gb|AJ499470.1|AJ499470 AJ499470 MTGIM Medicago truncatula cDNA clone mtgmacc120004f05, mRNA
sequence
Length = 128
Score = 44.1 bits (22), Expect = 0.028
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1212 cgcgtacctgcccgggcggccg 1233
||||||||||||||||||||||
Sbjct: 27 cgcgtacctgcccgggcggccg 6
>gb|AJ500217.1|AJ500217 AJ500217 MTGIM Medicago truncatula cDNA clone mtgmacc120014a04, mRNA
sequence
Length = 458
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1215 gtacctgcccgggcggccgct 1235
|||||||||||||||||||||
Sbjct: 300 gtacctgcccgggcggccgct 320
>gb|AJ500301.1|AJ500301 AJ500301 MTGIM Medicago truncatula cDNA clone mtgmacc120014h08, mRNA
sequence
Length = 164
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1215 gtacctgcccgggcggccgct 1235
|||||||||||||||||||||
Sbjct: 45 gtacctgcccgggcggccgct 25
>gb|AJ500566.1|AJ500566 AJ500566 MTGIM Medicago truncatula cDNA clone mtgmacc120017g10, mRNA
sequence
Length = 406
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1215 gtacctgcccgggcggccgct 1235
|||||||||||||||||||||
Sbjct: 290 gtacctgcccgggcggccgct 310
>gb|AJ500711.1|AJ500711 AJ500711 MTGIM Medicago truncatula cDNA clone mtgmacc120019d05, mRNA
sequence
Length = 591
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1215 gtacctgcccgggcggccgct 1235
|||||||||||||||||||||
Sbjct: 339 gtacctgcccgggcggccgct 319
>gb|AJ499175.1|AJ499175 AJ499175 MTGIM Medicago truncatula cDNA clone mtgmacc120001a07, mRNA
sequence
Length = 366
Score = 42.1 bits (21), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1212 cgcgtacctgcccgggcggccgct 1235
||||||||||||||||||| ||||
Sbjct: 339 cgcgtacctgcccgggcggncgct 362
>gb|AJ621860.1|AJ621860 AJ621860 Medicago truncatula J5 roots Medicago truncatula cDNA clone
MtGmEs470, mRNA sequence
Length = 1151
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1215 gtacctgcccgggcggccgct 1235
|||||||||||||||||||||
Sbjct: 297 gtacctgcccgggcggccgct 277
>gb|AJ864417.1|AJ864417 AJ864417 Medicago truncatula cv. J5 root Medicago truncatula cDNA
clone MtPfEs361, mRNA sequence
Length = 593
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1215 gtacctgcccgggcggccgct 1235
|||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgct 4
>gb|AL375508.1|AL375508 MtBB15B08R1 MtBB Medicago truncatula cDNA clone MtBB15B08 T7, mRNA
sequence
Length = 549
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 220 aaggttgcagcttctcaagg 239
||||||||||||||||||||
Sbjct: 329 aaggttgcagcttctcaagg 310
>gb|AJ500088.1|AJ500088 AJ500088 MTGIM Medicago truncatula cDNA clone mtgmacc120012e05, mRNA
sequence
Length = 114
Score = 40.1 bits (20), Expect = 0.44
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1212 cgcgtacctgcccgggcggccgct 1235
|||||||||||||||||| |||||
Sbjct: 27 cgcgtacctgcccgggcgcccgct 4
>gb|AJ500185.1|AJ500185 AJ500185 MTGIM Medicago truncatula cDNA clone mtgmacc120013f07, mRNA
sequence
Length = 557
Score = 40.1 bits (20), Expect = 0.44
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1212 cgcgtacctgcccgggcggccgct 1235
||||||||||||||||| ||||||
Sbjct: 27 cgcgtacctgcccgggcagccgct 4
>gb|AJ500456.1|AJ500456 AJ500456 MTGIM Medicago truncatula cDNA clone mtgmacc120016f01, mRNA
sequence
Length = 310
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1212 cgcgtacctgcccgggcggc 1231
||||||||||||||||||||
Sbjct: 291 cgcgtacctgcccgggcggc 310
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 314,450
Number of Sequences: 392609
Number of extensions: 314450
Number of successful extensions: 24645
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24628
Number of HSP's gapped (non-prelim): 17
length of query: 1236
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1216
effective length of database: 433,880,813
effective search space: 527599068608
effective search space used: 527599068608
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)