BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.723
(715 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|CT030192.6| M.truncatula DNA sequence from clone MTH2-1... 60 3e-007
gb|BF640885.1|BF640885 NF050D12IN1F1101 Insect herbivory Me... 54 2e-005
gb|CX542164.1|CX542164 s13dNF86A08GS055_467636 Germinating ... 54 2e-005
gb|AC147429.9| Medicago truncatula clone mth2-24m22, WORKIN... 52 7e-005
gb|AA660478.1|AA660478 00364 MtRHE Medicago truncatula cDNA... 50 3e-004
gb|AW694419.1|AW694419 NF076B12ST1F1096 Developing stem Med... 50 3e-004
gb|BE202444.1|BE202444 EST392893 KV1 Medicago truncatula cD... 50 3e-004
gb|BE202454.1|BE202454 EST392903 KV1 Medicago truncatula cD... 50 3e-004
gb|AL389157.1|AL389157 MtBC53B05F1 MtBC Medicago truncatula... 50 3e-004
gb|BF633626.1|BF633626 NF073C10DT1F1082 Drought Medicago tr... 50 3e-004
gb|BF636246.1|BF636246 NF059A07DT1F1052 Drought Medicago tr... 50 3e-004
gb|AW695212.2|AW695212 NF092D04ST1F1041 Developing stem Med... 50 3e-004
gb|AW697146.2|AW697146 NF115E10ST1F1082 Developing stem Med... 50 3e-004
gb|BG450825.1|BG450825 NF093E10DT1F1081 Drought Medicago tr... 50 3e-004
gb|BG581712.1|BG581712 EST483447 GVN Medicago truncatula cD... 50 3e-004
gb|BI271282.1|BI271282 NF053G12FL1F1100 Developing flower M... 50 3e-004
gb|BI309835.1|BI309835 EST5311585 GESD Medicago truncatula ... 50 3e-004
gb|AW329273.2|AW329273 N200493e rootphos(-) Medicago trunca... 48 0.001
gb|AL374004.1|AL374004 MtBB04B02F1 MtBB Medicago truncatula... 48 0.001
gb|BE249354.2|BE249354 NF014E10LF1F1082 Developing leaf Med... 48 0.001
gb|BG582102.1|BG582102 EST483840 GVN Medicago truncatula cD... 48 0.001
gb|BG582103.1|BG582103 EST483841 GVN Medicago truncatula cD... 48 0.001
gb|BG647007.1|BG647007 EST508626 HOGA Medicago truncatula c... 48 0.001
gb|BI266886.1|BI266886 NF094H07IN1F1064 Insect herbivory Me... 48 0.001
gb|BI272316.1|BI272316 NF017C11FL1F1085 Developing flower M... 48 0.001
gb|BQ124258.1|BQ124258 EST609834 GLSD Medicago truncatula c... 48 0.001
gb|BQ124409.1|BQ124409 EST609985 GLSD Medicago truncatula c... 48 0.001
gb|BQ750503.1|BQ750503 EST633239 KVKC Medicago truncatula c... 48 0.001
gb|CB893980.1|CB893980 EST646772 HOGA Medicago truncatula c... 48 0.001
gb|CA922986.1|CA922986 EST640704 MTUS Medicago truncatula c... 48 0.001
gb|AC131455.5| Medicago truncatula clone mth1-42h9, complet... 48 0.001
gb|AC124972.41| Medicago truncatula clone mth2-24j4, comple... 48 0.001
gb|AQ580029.1|AQ580029 T135582b shotgun sub-library of BAC ... 46 0.004
gb|AQ580105.1|AQ580105 T135662b shotgun sub-library of BAC ... 46 0.004
gb|BF004942.1|BF004942 EST433377 DSLC Medicago truncatula c... 46 0.004
gb|BI311950.1|BI311950 EST5313700 GESD Medicago truncatula ... 44 0.016
emb|CR327613.1| mte1-56G12FM1 BAC end, cultivar Jemalong A1... 40 0.25
gb|BF003223.1|BF003223 EST431771 KV1 Medicago truncatula cD... 40 0.25
emb|CR334520.1| mte1-64J14FM2 BAC end, cultivar Jemalong A1... 38 0.99
gb|AC144343.8| Medicago truncatula clone mth2-12c21, comple... 38 0.99
gb|CB893728.1|CB893728 EST646520 HOGA Medicago truncatula c... 36 3.9
gb|CB894377.1|CB894377 EST647169 HOGA Medicago truncatula c... 36 3.9
gb|AC144644.3| Medicago truncatula clone mth2-14l3, complet... 36 3.9
gb|AC149808.12| Medicago truncatula clone mth2-154g23, comp... 36 3.9
gb|AC147501.9| Medicago truncatula clone mth2-12n2, complet... 36 3.9
gb|AC147775.5| Medicago truncatula clone mth2-13d20, comple... 36 3.9
gb|AC151482.19| Medicago truncatula clone mth2-156b13, WORK... 36 3.9
gb|AC146664.33| Medicago truncatula clone mth2-10e20, WORKI... 36 3.9
gb|AC173288.2| Medicago truncatula chromosome 2 clone mth2-... 36 3.9
>emb|CT030192.6| M.truncatula DNA sequence from clone MTH2-16D16 on chromosome 3,
complete sequence
Length = 112216
Score = 60.0 bits (30), Expect = 3e-007
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 584 gacttctacatgtgtgcacatgctgggatgattg 617
|||||||||||||||||||||||||||| |||||
Sbjct: 52763 gacttctacatgtgtgcacatgctgggaggattg 52796
Score = 38.2 bits (19), Expect = 0.99
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 464 aagttcactgtgattgttgctcaaaagaaccaccacaccaagttctt 510
||||| ||| ||||||||||||| ||||| || ||||| | ||||||
Sbjct: 52561 aagtttactttgattgttgctcagaagaatcatcacactaggttctt 52607
>gb|BF640885.1|BF640885 NF050D12IN1F1101 Insect herbivory Medicago truncatula cDNA clone
NF050D12IN 5', mRNA sequence
Length = 677
Score = 54.0 bits (27), Expect = 2e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 419 cagatcatcgaggcatgtaagtttctggatgagaagtggtcacccaagttcactgtgatt 478
|||||||| |||||||| |||||||| ||||| || ||| | || || || || |||
Sbjct: 166 cagatcattgaggcatgcaagtttcttgatgaaaattggactccaaaatttgtggtaatt 225
Query: 479 gttgctcaaaagaaccaccacac 501
|||||||||||||||||||||||
Sbjct: 226 gttgctcaaaagaaccaccacac 248
Score = 54.0 bits (27), Expect = 2e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 339 gaaaaccagaacacataattattttcagggatggagtcagtga 381
|||||||||| |||||||||||||||||||||| || |||||
Sbjct: 86 gaaaaccagataacataattattttcagggatggtgttagtga 128
Score = 40.1 bits (20), Expect = 0.25
Identities = 53/64 (82%)
Strand = Plus / Plus
Query: 587 ttctacatgtgtgcacatgctgggatgattggaacaacaaggcccacccactatcatgtt 646
|||||| | ||||| |||||||||||||| || || | ||||| |||||||| |||||
Sbjct: 334 ttctacctctgtgctcatgctgggatgataggcaccagtaggcctacccactaccatgtg 393
Query: 647 ctgc 650
||||
Sbjct: 394 ctgc 397
>gb|CX542164.1|CX542164 s13dNF86A08GS055_467636 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 564
Score = 54.0 bits (27), Expect = 2e-005
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 419 cagatcatcgaggcatgtaagtttctggatgagaagtggtcacccaagttcactgtgatt 478
|||||||| |||||||| |||||||| ||||| || ||| | || || || || |||
Sbjct: 203 cagatcattgaggcatgcaagtttcttgatgaaaattggactccaaaatttgtggtaatt 262
Query: 479 gttgctcaaaagaaccaccacac 501
|||||||||||||||||||||||
Sbjct: 263 gttgctcaaaagaaccaccacac 285
Score = 54.0 bits (27), Expect = 2e-005
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 339 gaaaaccagaacacataattattttcagggatggagtcagtga 381
|||||||||| |||||||||||||||||||||| || |||||
Sbjct: 123 gaaaaccagataacataattattttcagggatggtgttagtga 165
Score = 40.1 bits (20), Expect = 0.25
Identities = 53/64 (82%)
Strand = Plus / Plus
Query: 587 ttctacatgtgtgcacatgctgggatgattggaacaacaaggcccacccactatcatgtt 646
|||||| | ||||| |||||||||||||| || || | ||||| |||||||| |||||
Sbjct: 371 ttctacctctgtgctcatgctgggatgataggcaccagtaggcctacccactaccatgtg 430
Query: 647 ctgc 650
||||
Sbjct: 431 ctgc 434
>gb|AC147429.9| Medicago truncatula clone mth2-24m22, WORKING DRAFT SEQUENCE, 7
unordered pieces
Length = 29702
Score = 52.0 bits (26), Expect = 7e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 476 attgttgctcaaaagaaccaccacac 501
||||||||||||||||||||||||||
Sbjct: 9084 attgttgctcaaaagaaccaccacac 9109
Score = 42.1 bits (21), Expect = 0.063
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 339 gaaaaccagaacacataattattttcagg 367
|||||||||| |||||||||||||||||
Sbjct: 8547 gaaaaccagataacataattattttcagg 8575
>gb|AA660478.1|AA660478 00364 MtRHE Medicago truncatula cDNA 5', mRNA sequence
Length = 651
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 tgaagatcaatgcaaagcttggtgg 45
|||||||||||||||||||||||||
Sbjct: 431 tgaagatcaatgcaaagcttggtgg 455
>gb|AW694419.1|AW694419 NF076B12ST1F1096 Developing stem Medicago truncatula cDNA clone
NF076B12ST 5', mRNA sequence
Length = 668
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 tgaagatcaatgcaaagcttggtgg 45
|||||||||||||||||||||||||
Sbjct: 441 tgaagatcaatgcaaagcttggtgg 465
>gb|BE202444.1|BE202444 EST392893 KV1 Medicago truncatula cDNA clone pKV1-2M1, mRNA
sequence
Length = 541
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 tgaagatcaatgcaaagcttggtgg 45
|||||||||||||||||||||||||
Sbjct: 241 tgaagatcaatgcaaagcttggtgg 265
>gb|BE202454.1|BE202454 EST392903 KV1 Medicago truncatula cDNA clone pKV1-2M13, mRNA
sequence
Length = 457
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 tgaagatcaatgcaaagcttggtgg 45
|||||||||||||||||||||||||
Sbjct: 265 tgaagatcaatgcaaagcttggtgg 289
>gb|AL389157.1|AL389157 MtBC53B05F1 MtBC Medicago truncatula cDNA clone MtBC53B05 T3, mRNA
sequence
Length = 498
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 tgaagatcaatgcaaagcttggtgg 45
|||||||||||||||||||||||||
Sbjct: 133 tgaagatcaatgcaaagcttggtgg 157
>gb|BF633626.1|BF633626 NF073C10DT1F1082 Drought Medicago truncatula cDNA clone
NF073C10DT 5', mRNA sequence
Length = 416
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 tgaagatcaatgcaaagcttggtgg 45
|||||||||||||||||||||||||
Sbjct: 24 tgaagatcaatgcaaagcttggtgg 48
>gb|BF636246.1|BF636246 NF059A07DT1F1052 Drought Medicago truncatula cDNA clone
NF059A07DT 5', mRNA sequence
Length = 683
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 tgaagatcaatgcaaagcttggtgg 45
|||||||||||||||||||||||||
Sbjct: 24 tgaagatcaatgcaaagcttggtgg 48
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 587 ttctacatgtgtgcacatgctgggatgattgg 618
|||||||||||||| |||||||| ||||||||
Sbjct: 596 ttctacatgtgtgctcatgctggaatgattgg 627
>gb|AW695212.2|AW695212 NF092D04ST1F1041 Developing stem Medicago truncatula cDNA clone
NF092D04ST 5', mRNA sequence
Length = 421
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 tgaagatcaatgcaaagcttggtgg 45
|||||||||||||||||||||||||
Sbjct: 115 tgaagatcaatgcaaagcttggtgg 139
>gb|AW697146.2|AW697146 NF115E10ST1F1082 Developing stem Medicago truncatula cDNA clone
NF115E10ST 5', mRNA sequence
Length = 631
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 tgaagatcaatgcaaagcttggtgg 45
|||||||||||||||||||||||||
Sbjct: 423 tgaagatcaatgcaaagcttggtgg 447
>gb|BG450825.1|BG450825 NF093E10DT1F1081 Drought Medicago truncatula cDNA clone NF093E10DT
5', mRNA sequence
Length = 683
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 tgaagatcaatgcaaagcttggtgg 45
|||||||||||||||||||||||||
Sbjct: 157 tgaagatcaatgcaaagcttggtgg 181
>gb|BG581712.1|BG581712 EST483447 GVN Medicago truncatula cDNA clone pGVN-65L9 5' end, mRNA
sequence
Length = 786
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 tgaagatcaatgcaaagcttggtgg 45
|||||||||||||||||||||||||
Sbjct: 420 tgaagatcaatgcaaagcttggtgg 444
>gb|BI271282.1|BI271282 NF053G12FL1F1100 Developing flower Medicago truncatula cDNA clone
NF053G12FL 5', mRNA sequence
Length = 653
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 tgaagatcaatgcaaagcttggtgg 45
|||||||||||||||||||||||||
Sbjct: 132 tgaagatcaatgcaaagcttggtgg 156
>gb|BI309835.1|BI309835 EST5311585 GESD Medicago truncatula cDNA clone pGESD4E4 5' end,
mRNA sequence
Length = 739
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 tgaagatcaatgcaaagcttggtgg 45
|||||||||||||||||||||||||
Sbjct: 82 tgaagatcaatgcaaagcttggtgg 106
Score = 38.2 bits (19), Expect = 0.99
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 587 ttctacatgtgtgcacatgctgg 609
|||||||||||||| ||||||||
Sbjct: 654 ttctacatgtgtgctcatgctgg 676
>gb|AW329273.2|AW329273 N200493e rootphos(-) Medicago truncatula cDNA clone MHRP-18C1, mRNA
sequence
Length = 588
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 587 ttctacatgtgtgcacatgctgggatgattgg 618
|||||||||||||| |||||||| ||||||||
Sbjct: 152 ttctacatgtgtgctcatgctggaatgattgg 183
>gb|AL374004.1|AL374004 MtBB04B02F1 MtBB Medicago truncatula cDNA clone MtBB04B02 T3, mRNA
sequence
Length = 492
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 587 ttctacatgtgtgcacatgctgggatgattgg 618
|||||||||||||| |||||||| ||||||||
Sbjct: 193 ttctacatgtgtgctcatgctggaatgattgg 224
>gb|BE249354.2|BE249354 NF014E10LF1F1082 Developing leaf Medicago truncatula cDNA clone
NF014E10LF 5', mRNA sequence
Length = 646
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 587 ttctacatgtgtgcacatgctgggatgattgg 618
|||||||||||||| |||||||| ||||||||
Sbjct: 115 ttctacatgtgtgctcatgctggaatgattgg 146
>gb|BG582102.1|BG582102 EST483840 GVN Medicago truncatula cDNA clone pGVN-66P23 5' end,
mRNA sequence
Length = 824
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 587 ttctacatgtgtgcacatgctgggatgattgg 618
|||||||||||||| |||||||| ||||||||
Sbjct: 456 ttctacatgtgtgctcatgctggaatgattgg 487
>gb|BG582103.1|BG582103 EST483841 GVN Medicago truncatula cDNA clone pGVN-66B2 5' end, mRNA
sequence
Length = 830
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 587 ttctacatgtgtgcacatgctgggatgattgg 618
|||||||||||||| |||||||| ||||||||
Sbjct: 455 ttctacatgtgtgctcatgctggaatgattgg 486
>gb|BG647007.1|BG647007 EST508626 HOGA Medicago truncatula cDNA clone pHOGA-15M6 5' end,
mRNA sequence
Length = 616
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 587 ttctacatgtgtgcacatgctgggatgattgg 618
|||||||||||||| |||||||| ||||||||
Sbjct: 162 ttctacatgtgtgctcatgctggaatgattgg 193
>gb|BI266886.1|BI266886 NF094H07IN1F1064 Insect herbivory Medicago truncatula cDNA clone
NF094H07IN 5', mRNA sequence
Length = 642
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 587 ttctacatgtgtgcacatgctgggatgattgg 618
|||||||||||||| |||||||| ||||||||
Sbjct: 210 ttctacatgtgtgctcatgctggaatgattgg 241
>gb|BI272316.1|BI272316 NF017C11FL1F1085 Developing flower Medicago truncatula cDNA clone
NF017C11FL 5', mRNA sequence
Length = 689
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 587 ttctacatgtgtgcacatgctgggatgattgg 618
|||||||||||||| |||||||| ||||||||
Sbjct: 516 ttctacatgtgtgctcatgctggaatgattgg 547
>gb|BQ124258.1|BQ124258 EST609834 GLSD Medicago truncatula cDNA clone pGLSD-34D22, mRNA
sequence
Length = 722
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 587 ttctacatgtgtgcacatgctgggatgattgg 618
|||||||||||||| |||||||| ||||||||
Sbjct: 164 ttctacatgtgtgctcatgctggaatgattgg 195
>gb|BQ124409.1|BQ124409 EST609985 GLSD Medicago truncatula cDNA clone pGLSD-35A4, mRNA
sequence
Length = 622
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 587 ttctacatgtgtgcacatgctgggatgattgg 618
|||||||||||||| |||||||| ||||||||
Sbjct: 427 ttctacatgtgtgctcatgctggaatgattgg 458
>gb|BQ750503.1|BQ750503 EST633239 KVKC Medicago truncatula cDNA, mRNA sequence
Length = 783
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 587 ttctacatgtgtgcacatgctgggatgattgg 618
|||||||||||||| |||||||| ||||||||
Sbjct: 643 ttctacatgtgtgctcatgctggaatgattgg 612
>gb|CB893980.1|CB893980 EST646772 HOGA Medicago truncatula cDNA clone HOGA-29L17, mRNA
sequence
Length = 794
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 587 ttctacatgtgtgcacatgctgggatgattgg 618
|||||||||||||| |||||||| ||||||||
Sbjct: 188 ttctacatgtgtgctcatgctggaatgattgg 219
>gb|CA922986.1|CA922986 EST640704 MTUS Medicago truncatula cDNA clone MTUS-61C12, mRNA
sequence
Length = 786
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 587 ttctacatgtgtgcacatgctgggatgattgg 618
|||||||||||||| |||||||| ||||||||
Sbjct: 647 ttctacatgtgtgctcatgctggaatgattgg 616
>gb|AC131455.5| Medicago truncatula clone mth1-42h9, complete sequence
Length = 96063
Score = 48.1 bits (24), Expect = 0.001
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 542 ggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttctacatgtgtgca 601
|||||||| ||||| || ||| |||||||||||| ||| | || || || ||||||||
Sbjct: 87809 ggaactgttgtggacagcaaaatttgccatcctaggaattatgatttttatatgtgtgct 87868
Query: 602 catgctgggatgattg 617
|||||||| |||||||
Sbjct: 87869 catgctggaatgattg 87884
Score = 46.1 bits (23), Expect = 0.004
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 587 ttctacatgtgtgcacatgctgggatgattg 617
|||||||||||||| |||||||| |||||||
Sbjct: 79736 ttctacatgtgtgctcatgctggaatgattg 79766
>gb|AC124972.41| Medicago truncatula clone mth2-24j4, complete sequence
Length = 124069
Score = 48.1 bits (24), Expect = 0.001
Identities = 63/76 (82%)
Strand = Plus / Minus
Query: 542 ggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttctacatgtgtgca 601
|||||||| ||||| || ||| |||||||||||| ||| | || || || ||||||||
Sbjct: 66067 ggaactgttgtggacagcaaaatttgccatcctaggaattatgatttttatatgtgtgct 66008
Query: 602 catgctgggatgattg 617
|||||||| |||||||
Sbjct: 66007 catgctggaatgattg 65992
Score = 46.1 bits (23), Expect = 0.004
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 587 ttctacatgtgtgcacatgctgggatgattg 617
|||||||||||||| |||||||| |||||||
Sbjct: 74140 ttctacatgtgtgctcatgctggaatgattg 74110
>gb|AQ580029.1|AQ580029 T135582b shotgun sub-library of BAC clone 42H09 Medicago truncatula
genomic clone 42-H-09-C-006, DNA sequence
Length = 523
Score = 46.1 bits (23), Expect = 0.004
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 587 ttctacatgtgtgcacatgctgggatgattg 617
|||||||||||||| |||||||| |||||||
Sbjct: 518 ttctacatgtgtgctcatgctggaatgattg 488
>gb|AQ580105.1|AQ580105 T135662b shotgun sub-library of BAC clone 42H09 Medicago truncatula
genomic clone 42-H-09-C-086, DNA sequence
Length = 447
Score = 46.1 bits (23), Expect = 0.004
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 587 ttctacatgtgtgcacatgctgggatgattg 617
|||||||||||||| |||||||| |||||||
Sbjct: 326 ttctacatgtgtgctcatgctggaatgattg 296
>gb|BF004942.1|BF004942 EST433377 DSLC Medicago truncatula cDNA clone pDSLC-28C5, mRNA
sequence
Length = 508
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tgaagatcaatgcaaagcttggt 43
|||||||||||||||||||||||
Sbjct: 486 tgaagatcaatgcaaagcttggt 508
>gb|BI311950.1|BI311950 EST5313700 GESD Medicago truncatula cDNA clone pGESD16D7 5' end,
mRNA sequence
Length = 592
Score = 44.1 bits (22), Expect = 0.016
Identities = 64/78 (82%)
Strand = Plus / Plus
Query: 546 ctgtggtggatagtaaagtttgccatcctaagaacttcgacttctacatgtgtgcacatg 605
|||| ||||| || ||| |||||||||||| ||| | || || || |||||||| ||||
Sbjct: 1 ctgttgtggacagcaaaatttgccatcctaggaattatgatttttatatgtgtgctcatg 60
Query: 606 ctgggatgattggaacaa 623
|||| |||||||| ||||
Sbjct: 61 ctggaatgattggtacaa 78
>emb|CR327613.1| mte1-56G12FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 832
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 351 acataattattttcagggat 370
||||||||||||||||||||
Sbjct: 54 acataattattttcagggat 73
>gb|BF003223.1|BF003223 EST431771 KV1 Medicago truncatula cDNA clone pKV1-3E1, mRNA
sequence
Length = 397
Score = 40.1 bits (20), Expect = 0.25
Identities = 53/64 (82%)
Strand = Plus / Plus
Query: 587 ttctacatgtgtgcacatgctgggatgattggaacaacaaggcccacccactatcatgtt 646
|||||| | ||||| |||||||||||||| || || | ||||| |||||||| |||||
Sbjct: 184 ttctacctctgtgctcatgctgggatgataggcaccagtaggcctacccactaccatgtg 243
Query: 647 ctgc 650
||||
Sbjct: 244 ctgc 247
>emb|CR334520.1| mte1-64J14FM2 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 579
Score = 38.2 bits (19), Expect = 0.99
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 351 acataattattttcaggga 369
|||||||||||||||||||
Sbjct: 42 acataattattttcaggga 60
>gb|AC144343.8| Medicago truncatula clone mth2-12c21, complete sequence
Length = 130740
Score = 38.2 bits (19), Expect = 0.99
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 275 ggtactgatgatgatggcc 293
|||||||||||||||||||
Sbjct: 17172 ggtactgatgatgatggcc 17190
>gb|CB893728.1|CB893728 EST646520 HOGA Medicago truncatula cDNA clone HOGA-28H4, mRNA
sequence
Length = 786
Score = 36.2 bits (18), Expect = 3.9
Identities = 30/34 (88%)
Strand = Plus / Plus
Query: 21 tgaagatcaatgcaaagcttggtggtctgaactc 54
||||||| ||||| ||||||||||| |||||||
Sbjct: 467 tgaagataaatgccaagcttggtgggttgaactc 500
>gb|CB894377.1|CB894377 EST647169 HOGA Medicago truncatula cDNA clone HOGA-31A19, mRNA
sequence
Length = 836
Score = 36.2 bits (18), Expect = 3.9
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 10 taatttgctgatgaagat 27
||||||||||||||||||
Sbjct: 818 taatttgctgatgaagat 835
>gb|AC144644.3| Medicago truncatula clone mth2-14l3, complete sequence
Length = 117645
Score = 36.2 bits (18), Expect = 3.9
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 485 caaaagaaccaccacaccaagt 506
||||||||||||||| ||||||
Sbjct: 7515 caaaagaaccaccactccaagt 7536
>gb|AC149808.12| Medicago truncatula clone mth2-154g23, complete sequence
Length = 64610
Score = 36.2 bits (18), Expect = 3.9
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 347 gaacacataattattttc 364
||||||||||||||||||
Sbjct: 12830 gaacacataattattttc 12813
>gb|AC147501.9| Medicago truncatula clone mth2-12n2, complete sequence
Length = 140523
Score = 36.2 bits (18), Expect = 3.9
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 329 tctggaaagcgaaaacca 346
||||||||||||||||||
Sbjct: 105189 tctggaaagcgaaaacca 105206
>gb|AC147775.5| Medicago truncatula clone mth2-13d20, complete sequence
Length = 117523
Score = 36.2 bits (18), Expect = 3.9
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 27 tcaatgcaaagcttggtg 44
||||||||||||||||||
Sbjct: 47274 tcaatgcaaagcttggtg 47257
>gb|AC151482.19| Medicago truncatula clone mth2-156b13, WORKING DRAFT SEQUENCE, 5
unordered pieces
Length = 122134
Score = 36.2 bits (18), Expect = 3.9
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 347 gaacacataattattttc 364
||||||||||||||||||
Sbjct: 16165 gaacacataattattttc 16148
>gb|AC146664.33| Medicago truncatula clone mth2-10e20, WORKING DRAFT SEQUENCE, 2 ordered
pieces
Length = 122843
Score = 36.2 bits (18), Expect = 3.9
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 479 gttgctcaaaagaaccaccaca 500
|||||||||||||||| |||||
Sbjct: 78170 gttgctcaaaagaacctccaca 78191
>gb|AC173288.2| Medicago truncatula chromosome 2 clone mth2-145k7, *** SEQUENCING IN
PROGRESS ***, 5 ordered pieces
Length = 122167
Score = 36.2 bits (18), Expect = 3.9
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 329 tctggaaagcgaaaacca 346
||||||||||||||||||
Sbjct: 75643 tctggaaagcgaaaacca 75626
Database: Mt_nucl_with_EST.fasta
Posted date: May 2, 2006 2:46 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 173,031
Number of Sequences: 392609
Number of extensions: 173031
Number of successful extensions: 13101
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12969
Number of HSP's gapped (non-prelim): 132
length of query: 715
length of database: 441,732,993
effective HSP length: 19
effective length of query: 696
effective length of database: 434,273,422
effective search space: 302254301712
effective search space used: 302254301712
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)