BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.569
(1263 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ123969.1|BQ123969 EST609545 GLSD Medicago truncatula c... 119 6e-025
gb|CB892640.1|CB892640 EST645432 HOGA Medicago truncatula c... 119 6e-025
gb|CA920649.1|CA920649 EST638367 MTUS Medicago truncatula c... 119 6e-025
gb|AL373654.1|AL373654 MtBB02A09F3 MtBB Medicago truncatula... 117 2e-024
gb|AL367921.1|AL367921 MtBA21B04R1 MtBA Medicago truncatula... 111 1e-022
gb|AL369659.1|AL369659 MtBA32E02R1 MtBA Medicago truncatula... 111 1e-022
gb|AL366474.1|AL366474 MtBA08B10R1 MtBA Medicago truncatula... 107 2e-021
gb|BQ123510.1|BQ123510 EST609086 GLSD Medicago truncatula c... 103 4e-020
gb|CA917138.1|CA917138 EST641285 GPOD Medicago truncatula c... 84 3e-014
gb|CG941610.1|CG941610 MBEGL75TFB mth2 Medicago truncatula ... 80 5e-013
gb|AL388927.1|AL388927 MtBC51F06R2 MtBC Medicago truncatula... 72 1e-010
gb|BF520583.1|BF520583 EST458056 DSIL Medicago truncatula c... 66 8e-009
gb|AW691102.2|AW691102 NF041C06ST1F1000 Developing stem Med... 66 8e-009
gb|BQ123432.1|BQ123432 EST609008 GLSD Medicago truncatula c... 56 7e-006
gb|AL382617.1|AL382617 MtBC09A02F1 MtBC Medicago truncatula... 54 3e-005
gb|AL382618.1|AL382618 MtBC09A02R1 MtBC Medicago truncatula... 52 1e-004
gb|BG644390.1|BG644390 EST506009 KV3 Medicago truncatula cD... 50 5e-004
gb|BI270015.1|BI270015 NF003C03FL1F1022 Developing flower M... 44 0.029
gb|AW559410.1|AW559410 EST314458 DSIR Medicago truncatula c... 42 0.11
gb|BF519814.1|BF519814 EST457278 DSIL Medicago truncatula c... 42 0.11
gb|DW018880.1|DW018880 EST1227841 MTY Medicago truncatula c... 42 0.11
gb|BE325065.1|BE325065 NF119G11ST1F1087 Developing stem Med... 40 0.45
>gb|BQ123969.1|BQ123969 EST609545 GLSD Medicago truncatula cDNA clone pGLSD-33N24, mRNA
sequence
Length = 690
Score = 119 bits (60), Expect = 6e-025
Identities = 273/344 (79%)
Strand = Plus / Minus
Query: 420 ggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaactttgaac 479
||||||||||||| ||||| || | |||||||| || || | ||||| |||||||||
Sbjct: 669 ggaatctgctttgctaaagataagcttgtatatccaagtctatcatactccactttgaac 610
Query: 480 tggaaaactccgtagacatcaggaactttgaaggatgttgagtataaacccttgttgtca 539
|||||||| || |||||||| ||||| || || ||||| | || |||||||||||||
Sbjct: 609 tggaaaaccccatagacatctggaaccttaaacgatgtgaaataacgacccttgttgtca 550
Query: 540 ttcgacatagttttcagaacataaggactcatcatgaaaaactggagttgcacatcatca 599
|| || | ||| |||| ||||| || ||||||||| |||| || | ||| |||||||||
Sbjct: 549 tttgataaagtcttcaagacataggggctcatcatgtaaaattgaacttgaacatcatca 490
Query: 600 gcaacatatggcttccagcttgttccagaccattcatagatctcaacagagtattccagg 659
|| ||||| || | ||| |||| |||||||| ||||| |||||||||||||||||||
Sbjct: 489 gctacataaggttcccatgttgtcccagaccactcataaatctcaacagagtattccaaa 430
Query: 660 tcatcgttaatgcggtacatgcctggttcattggtctccccaaccttgtggtgcttaaca 719
|||||||| || | || || |||||| || || |||||||| |||||||| | |||
Sbjct: 429 tcatcgttgatcctatagatagatggttcgttagtttccccaactttgtggtgttgcaca 370
Query: 720 ttaacagccttaaggtgccccctctcatggaagacccatttgct 763
|| || ||||| ||||| || || || ||||| |||||||||||
Sbjct: 369 ttcaccgccttgaggtgacctctttcgtggaaaacccatttgct 326
Score = 42.1 bits (21), Expect = 0.11
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 884 ccgagcattatttcttgcctgcataaccgaaac 916
||||||||||||||| ||||| ||||| |||||
Sbjct: 205 ccgagcattatttctcgcctgtataactgaaac 173
>gb|CB892640.1|CB892640 EST645432 HOGA Medicago truncatula cDNA clone HOGA-19G16, mRNA
sequence
Length = 758
Score = 119 bits (60), Expect = 6e-025
Identities = 273/344 (79%)
Strand = Plus / Minus
Query: 420 ggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaactttgaac 479
||||||||||||| ||||| || | |||||||| || || | ||||| |||||||||
Sbjct: 627 ggaatctgctttgctaaagataagcttgtatatccaagtctatcatactccactttgaac 568
Query: 480 tggaaaactccgtagacatcaggaactttgaaggatgttgagtataaacccttgttgtca 539
|||||||| || |||||||| ||||| || || ||||| | || |||||||||||||
Sbjct: 567 tggaaaaccccatagacatctggaaccttaaacgatgtgaaataacgacccttgttgtca 508
Query: 540 ttcgacatagttttcagaacataaggactcatcatgaaaaactggagttgcacatcatca 599
|| || | ||| |||| ||||| || ||||||||| |||| || | ||| |||||||||
Sbjct: 507 tttgataaagtcttcaagacataggggctcatcatgtaaaattgaacttgaacatcatca 448
Query: 600 gcaacatatggcttccagcttgttccagaccattcatagatctcaacagagtattccagg 659
|| ||||| || | ||| |||| |||||||| ||||| |||||||||||||||||||
Sbjct: 447 gctacataaggttcccatgttgtcccagaccactcataaatctcaacagagtattccaaa 388
Query: 660 tcatcgttaatgcggtacatgcctggttcattggtctccccaaccttgtggtgcttaaca 719
|||||||| || | || || |||||| || || |||||||| |||||||| | |||
Sbjct: 387 tcatcgttgatcctatagatagatggttcgttagtttccccaactttgtggtgttgcaca 328
Query: 720 ttaacagccttaaggtgccccctctcatggaagacccatttgct 763
|| || ||||| ||||| || || || ||||| |||||||||||
Sbjct: 327 ttcaccgccttgaggtgacctctttcgtggaaaacccatttgct 284
Score = 42.1 bits (21), Expect = 0.11
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 884 ccgagcattatttcttgcctgcataaccgaaac 916
||||||||||||||| ||||| ||||| |||||
Sbjct: 163 ccgagcattatttctcgcctgtataactgaaac 131
>gb|CA920649.1|CA920649 EST638367 MTUS Medicago truncatula cDNA clone MTUS-30F11, mRNA
sequence
Length = 821
Score = 119 bits (60), Expect = 6e-025
Identities = 273/344 (79%)
Strand = Plus / Plus
Query: 420 ggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaactttgaac 479
||||||||||||| ||||| || | |||||||| || || | ||||| |||||||||
Sbjct: 215 ggaatctgctttgctaaagataagcttgtatatccaagtctatcatactccactttgaac 274
Query: 480 tggaaaactccgtagacatcaggaactttgaaggatgttgagtataaacccttgttgtca 539
|||||||| || |||||||| ||||| || || ||||| | || |||||||||||||
Sbjct: 275 tggaaaaccccatagacatctggaaccttaaacgatgtgaaataacgacccttgttgtca 334
Query: 540 ttcgacatagttttcagaacataaggactcatcatgaaaaactggagttgcacatcatca 599
|| || | ||| |||| ||||| || ||||||||| |||| || | ||| |||||||||
Sbjct: 335 tttgataaagtcttcaagacataggggctcatcatgtaaaattgaacttgaacatcatca 394
Query: 600 gcaacatatggcttccagcttgttccagaccattcatagatctcaacagagtattccagg 659
|| ||||| || | ||| |||| |||||||| ||||| |||||||||||||||||||
Sbjct: 395 gctacataaggttcccatgttgtcccagaccactcataaatctcaacagagtattccaaa 454
Query: 660 tcatcgttaatgcggtacatgcctggttcattggtctccccaaccttgtggtgcttaaca 719
|||||||| || | || || |||||| || || |||||||| |||||||| | |||
Sbjct: 455 tcatcgttgatcctatagatagatggttcgttagtttccccaactttgtggtgttgcaca 514
Query: 720 ttaacagccttaaggtgccccctctcatggaagacccatttgct 763
|| || ||||| ||||| || || || ||||| |||||||||||
Sbjct: 515 ttcaccgccttgaggtgacctctttcgtggaaaacccatttgct 558
>gb|AL373654.1|AL373654 MtBB02A09F3 MtBB Medicago truncatula cDNA clone MtBB02A09 T3, mRNA
sequence
Length = 465
Score = 117 bits (59), Expect = 2e-024
Identities = 239/299 (79%)
Strand = Plus / Minus
Query: 465 tactcaactttgaactggaaaactccgtagacatcaggaactttgaaggatgttgagtat 524
||||| ||||||||||||||||| || |||||||| ||||| || || ||||| | ||
Sbjct: 452 tactccactttgaactggaaaaccccatagacatctggaaccttaaacgatgtgaaataa 393
Query: 525 aaacccttgttgtcattcgacatagttttcagaacataaggactcatcatgaaaaactgg 584
||||||||||||||| || | ||| |||| ||||| || ||||||||| |||| ||
Sbjct: 392 cgacccttgttgtcatttgataaagtcttcaagacataggggctcatcatgtaaaattga 333
Query: 585 agttgcacatcatcagcaacatatggcttccagcttgttccagaccattcatagatctca 644
| ||| ||||||||||| ||||| || | ||| |||| |||||||| ||||| ||||||
Sbjct: 332 acttgaacatcatcagctacataaggttcccatgttgtcccagaccactcataaatctca 273
Query: 645 acagagtattccaggtcatcgttaatgcggtacatgcctggttcattggtctccccaacc 704
||||||||||||| |||||||| || | || || |||||| || || ||||||||
Sbjct: 272 acagagtattccaaatcatcgttgatcctatagatagatggttcgttagtttccccaact 213
Query: 705 ttgtggtgcttaacattaacagccttaaggtgccccctctcatggaagacccatttgct 763
|||||||| | ||||| || ||||| ||||| || || || ||||| |||||||||||
Sbjct: 212 ttgtggtgttgcacattcaccgccttgaggtgacctctttcgtggaaaacccatttgct 154
Score = 42.1 bits (21), Expect = 0.11
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 884 ccgagcattatttcttgcctgcataaccgaaac 916
||||||||||||||| ||||| ||||| |||||
Sbjct: 33 ccgagcattatttctcgcctgtataactgaaac 1
>gb|AL367921.1|AL367921 MtBA21B04R1 MtBA Medicago truncatula cDNA clone MtBA21B04 T7, mRNA
sequence
Length = 558
Score = 111 bits (56), Expect = 1e-022
Identities = 200/248 (80%)
Strand = Plus / Minus
Query: 420 ggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaactttgaac 479
||||||||||||| ||||| || | |||||||| || || | ||||| |||||||||
Sbjct: 269 ggaatctgctttgctaaagataagcttgtatatccaagtctatcatactccactttgaac 210
Query: 480 tggaaaactccgtagacatcaggaactttgaaggatgttgagtataaacccttgttgtca 539
|||||||| || |||||||| ||||| || || ||||| | || |||||||||||||
Sbjct: 209 tggaaaaccccatagacatctggaaccttaaacgatgtgaaataacgacccttgttgtca 150
Query: 540 ttcgacatagttttcagaacataaggactcatcatgaaaaactggagttgcacatcatca 599
|| || | ||| |||| ||||| || ||||||||| |||| || | ||| |||||||||
Sbjct: 149 tttgataaagtcttcaagacataggggctcatcatgtaaaattgaacttgaacatcatca 90
Query: 600 gcaacatatggcttccagcttgttccagaccattcatagatctcaacagagtattccagg 659
|| ||||| || | ||| |||| |||||||| ||||| |||||||||||||||||||
Sbjct: 89 gctacataaggttcccatgttgtcccagaccactcataaatctcaacagagtattccaaa 30
Query: 660 tcatcgtt 667
||||||||
Sbjct: 29 tcatcgtt 22
>gb|AL369659.1|AL369659 MtBA32E02R1 MtBA Medicago truncatula cDNA clone MtBA32E02 T7, mRNA
sequence
Length = 523
Score = 111 bits (56), Expect = 1e-022
Identities = 200/248 (80%)
Strand = Plus / Minus
Query: 420 ggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaactttgaac 479
||||||||||||| ||||| || | |||||||| || || | ||||| |||||||||
Sbjct: 253 ggaatctgctttgctaaagataagcttgtatatccaagtctatcatactccactttgaac 194
Query: 480 tggaaaactccgtagacatcaggaactttgaaggatgttgagtataaacccttgttgtca 539
|||||||| || |||||||| ||||| || || ||||| | || |||||||||||||
Sbjct: 193 tggaaaaccccatagacatctggaaccttaaacgatgtgaaataacgacccttgttgtca 134
Query: 540 ttcgacatagttttcagaacataaggactcatcatgaaaaactggagttgcacatcatca 599
|| || | ||| |||| ||||| || ||||||||| |||| || | ||| |||||||||
Sbjct: 133 tttgataaagtcttcaagacataggggctcatcatgtaaaattgaacttgaacatcatca 74
Query: 600 gcaacatatggcttccagcttgttccagaccattcatagatctcaacagagtattccagg 659
|| ||||| || | ||| |||| |||||||| ||||| |||||||||||||||||||
Sbjct: 73 gctacataaggttcccatgttgtcccagaccactcataaatctcaacagagtattccaaa 14
Query: 660 tcatcgtt 667
||||||||
Sbjct: 13 tcatcgtt 6
>gb|AL366474.1|AL366474 MtBA08B10R1 MtBA Medicago truncatula cDNA clone MtBA08B10 T7, mRNA
sequence
Length = 503
Score = 107 bits (54), Expect = 2e-021
Identities = 192/238 (80%)
Strand = Plus / Minus
Query: 420 ggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaactttgaac 479
||||||||||||| ||||| || | |||||||| || || | ||||| |||||||||
Sbjct: 241 ggaatctgctttgctaaagataagcttgtatatccaagtctatcatactccactttgaac 182
Query: 480 tggaaaactccgtagacatcaggaactttgaaggatgttgagtataaacccttgttgtca 539
|||||||| || |||||||| ||||| || || ||||| | || |||||||||||||
Sbjct: 181 tggaaaaccccatagacatctggaaccttaaacgatgtgaaataacgacccttgttgtca 122
Query: 540 ttcgacatagttttcagaacataaggactcatcatgaaaaactggagttgcacatcatca 599
|| || | ||| |||| ||||| || ||||||||| |||| || | ||| |||||||||
Sbjct: 121 tttgataaagtcttcaagacataggggctcatcatgtaaaattgaacttgaacatcatca 62
Query: 600 gcaacatatggcttccagcttgttccagaccattcatagatctcaacagagtattcca 657
|| ||||| || | ||| |||| |||||||| ||||| |||||||||||||||||||
Sbjct: 61 gctacataaggttcccatgttgtcccagaccactcataaatctcaacagagtattcca 4
>gb|BQ123510.1|BQ123510 EST609086 GLSD Medicago truncatula cDNA clone pGLSD-32D17, mRNA
sequence
Length = 763
Score = 103 bits (52), Expect = 4e-020
Identities = 268/340 (78%)
Strand = Plus / Minus
Query: 424 tctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaactttgaactgga 483
|||||||||| ||||| || | |||||||| || || | ||||| |||| |||||||
Sbjct: 701 tctgctttgttaaagataagcttgtatatccaagtctatcatactccacttgaaactgga 642
Query: 484 aaactccgtagacatcaggaactttgaaggatgttgagtataaacccttgttgtcattcg 543
|||| || |||||||| ||||| || || ||||| | || ||||||||||||||| |
Sbjct: 641 aaaccccatagacatctggaaccttaaacgatgtgaaataacgacccttgttgtcatttg 582
Query: 544 acatagttttcagaacataaggactcatcatgaaaaactggagttgcacatcatcagcaa 603
| | ||| |||| ||||| || ||||||||| |||| || | ||| ||||||||||| |
Sbjct: 581 ataaagtcttcaagacataggggctcatcatgtaaaattgaacttgaacatcatcagcta 522
Query: 604 catatggcttccagcttgttccagaccattcatagatctcaacagagtattccaggtcat 663
|||| || | ||| |||| |||||||| ||||| ||||||||||||||||||| ||||
Sbjct: 521 cataaggttcccatgttgtcccagaccactcataaatctcaacagagtattccaaatcat 462
Query: 664 cgttaatgcggtacatgcctggttcattggtctccccaaccttgtggtgcttaacattaa 723
|||| || | || || |||||| || || |||||||| |||||||| | ||||| |
Sbjct: 461 cgttgatcctatagatagatggttcgttagtttccccaactttgtggtgttgcacattca 402
Query: 724 cagccttaaggtgccccctctcatggaagacccatttgct 763
| ||||| ||||| || || || ||||| |||||||||||
Sbjct: 401 ccgccttgaggtgacctctttcgtggaaaacccatttgct 362
Score = 42.1 bits (21), Expect = 0.11
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 884 ccgagcattatttcttgcctgcataaccgaaac 916
||||||||||||||| ||||| ||||| |||||
Sbjct: 241 ccgagcattatttctcgcctgtataactgaaac 209
>gb|CA917138.1|CA917138 EST641285 GPOD Medicago truncatula cDNA clone GPOD-35C4, mRNA
sequence
Length = 733
Score = 83.8 bits (42), Expect = 3e-014
Identities = 165/206 (80%)
Strand = Plus / Minus
Query: 558 acataaggactcatcatgaaaaactggagttgcacatcatcagcaacatatggcttccag 617
||||| || ||||||||| |||| || | ||| ||||||||||| ||||| || | |||
Sbjct: 708 acataggggctcatcatgtaaaattgaacttgaacatcatcagctacataaggttcccat 649
Query: 618 cttgttccagaccattcatagatctcaacagagtattccaggtcatcgttaatgcggtac 677
|||| |||||||| ||||| ||||||||||||||||||| |||||||| || | ||
Sbjct: 648 gttgtcccagaccactcataaatctcaacagagtattccaaatcatcgttgatcctatag 589
Query: 678 atgcctggttcattggtctccccaaccttgtggtgcttaacattaacagccttaaggtgc 737
|| |||||| || || |||||||| |||||||| | ||||| || ||||| |||||
Sbjct: 588 atagatggttcgttagtttccccaactttgtggtgttgcacattcaccgccttgaggtga 529
Query: 738 cccctctcatggaagacccatttgct 763
|| || || ||||| |||||||||||
Sbjct: 528 cctctttcgtggaaaacccatttgct 503
Score = 42.1 bits (21), Expect = 0.11
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 884 ccgagcattatttcttgcctgcataaccgaaac 916
||||||||||||||| ||||| ||||| |||||
Sbjct: 382 ccgagcattatttctcgcctgtataactgaaac 350
>gb|CG941610.1|CG941610 MBEGL75TFB mth2 Medicago truncatula genomic clone 50N6, DNA
sequence
Length = 923
Score = 79.8 bits (40), Expect = 5e-013
Identities = 106/128 (82%)
Strand = Plus / Plus
Query: 529 ccttgttgtcattcgacatagttttcagaacataaggactcatcatgaaaaactggagtt 588
||||||||||||| || | ||| |||| ||||| || ||||||||| |||| || | ||
Sbjct: 177 ccttgttgtcatttgataaagtcttcaagacataggggctcatcatgtaaaattgaactt 236
Query: 589 gcacatcatcagcaacatatggcttccagcttgttccagaccattcatagatctcaacag 648
| ||||||||||| ||||| || | ||| |||| |||||||| ||||| ||||||||||
Sbjct: 237 gaacatcatcagctacataaggttcccatgttgtcccagaccactcataaatctcaacag 296
Query: 649 agtattcc 656
||||||||
Sbjct: 297 agtattcc 304
Score = 50.1 bits (25), Expect = 5e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 465 tactcaactttgaactggaaaactccgtagacatcaggaac 505
||||| ||||||||||||||||| || |||||||| |||||
Sbjct: 24 tactccactttgaactggaaaaccccatagacatctggaac 64
>gb|AL388927.1|AL388927 MtBC51F06R2 MtBC Medicago truncatula cDNA clone MtBC51F06 T7, mRNA
sequence
Length = 551
Score = 71.9 bits (36), Expect = 1e-010
Identities = 150/188 (79%)
Strand = Plus / Minus
Query: 420 ggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaactttgaac 479
||||||||||||| ||||| || | |||||||| || || | ||||| |||||||||
Sbjct: 212 ggaatctgctttgctaaagataagcttgtatatccaagtctatcatactccactttgaac 153
Query: 480 tggaaaactccgtagacatcaggaactttgaaggatgttgagtataaacccttgttgtca 539
|||||||| || |||||||| ||||| || || ||||| | || |||||||||||||
Sbjct: 152 tggaaaaccccatagacatctggaaccttaaacgatgtgaaataacgacccttgttgtca 93
Query: 540 ttcgacatagttttcagaacataaggactcatcatgaaaaactggagttgcacatcatca 599
|| || | ||| |||| ||||| || ||||||||| |||| || | ||| |||||||||
Sbjct: 92 tttgataaagtcttcaagacataggggctcatcatgtaaaattgaacttgaacatcatca 33
Query: 600 gcaacata 607
|| |||||
Sbjct: 32 gctacata 25
>gb|BF520583.1|BF520583 EST458056 DSIL Medicago truncatula cDNA clone pDSIL-24F10, mRNA
sequence
Length = 623
Score = 65.9 bits (33), Expect = 8e-009
Identities = 117/145 (80%)
Strand = Plus / Minus
Query: 619 ttgttccagaccattcatagatctcaacagagtattccaggtcatcgttaatgcggtaca 678
|||| |||||||| ||||| ||||||||||||||||||| |||||||| || | || |
Sbjct: 610 ttgtcccagaccactcataaatctcaacagagtattccaaatcatcgttgatcctataga 551
Query: 679 tgcctggttcattggtctccccaaccttgtggtgcttaacattaacagccttaaggtgcc 738
| |||||| || || |||||||| |||||||| | ||||| || ||||| ||||| |
Sbjct: 550 tagatggttcgttagtttccccaactttgtggtgttgcacattcaccgccttgaggtgac 491
Query: 739 ccctctcatggaagacccatttgct 763
| || || ||||| |||||||||||
Sbjct: 490 ctctttcgtggaaaacccatttgct 466
Score = 42.1 bits (21), Expect = 0.11
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 884 ccgagcattatttcttgcctgcataaccgaaac 916
||||||||||||||| ||||| ||||| |||||
Sbjct: 345 ccgagcattatttctcgcctgtataactgaaac 313
>gb|AW691102.2|AW691102 NF041C06ST1F1000 Developing stem Medicago truncatula cDNA clone
NF041C06ST 5', mRNA sequence
Length = 575
Score = 65.9 bits (33), Expect = 8e-009
Identities = 117/145 (80%)
Strand = Plus / Minus
Query: 619 ttgttccagaccattcatagatctcaacagagtattccaggtcatcgttaatgcggtaca 678
|||| |||||||| ||||| ||||||||||||||||||| |||||||| || | || |
Sbjct: 493 ttgtcccagaccactcataaatctcaacagagtattccaaatcatcgttgatcctataga 434
Query: 679 tgcctggttcattggtctccccaaccttgtggtgcttaacattaacagccttaaggtgcc 738
| |||||| || || |||||||| |||||||| | ||||| || ||||| ||||| |
Sbjct: 433 tagatggttcgttagtttccccaactttgtggtgttgcacattcaccgccttgaggtgac 374
Query: 739 ccctctcatggaagacccatttgct 763
| || || ||||| |||||||||||
Sbjct: 373 ctctttcgtggaaaacccatttgct 349
Score = 42.1 bits (21), Expect = 0.11
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 884 ccgagcattatttcttgcctgcataaccgaaac 916
||||||||||||||| ||||| ||||| |||||
Sbjct: 228 ccgagcattatttctcgcctgtataactgaaac 196
>gb|BQ123432.1|BQ123432 EST609008 GLSD Medicago truncatula cDNA clone pGLSD-32O11, mRNA
sequence
Length = 430
Score = 56.0 bits (28), Expect = 7e-006
Identities = 64/76 (84%)
Strand = Plus / Minus
Query: 591 acatcatcagcaacatatggcttccagcttgttccagaccattcatagatctcaacagag 650
||||||||||| ||||| || | ||| |||| |||| ||| ||||| ||||||||||||
Sbjct: 388 acatcatcagctacatagggttcccatgttgtcccagcccactcataaatctcaacagag 329
Query: 651 tattccaggtcatcgt 666
||||||| |||||||
Sbjct: 328 tattccaaatcatcgt 313
Score = 42.1 bits (21), Expect = 0.11
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 884 ccgagcattatttcttgcctgcataaccgaaac 916
||||||||||||||| ||||| ||||| |||||
Sbjct: 95 ccgagcattatttctcgcctgtataactgaaac 63
>gb|AL382617.1|AL382617 MtBC09A02F1 MtBC Medicago truncatula cDNA clone MtBC09A02 T3, mRNA
sequence
Length = 441
Score = 54.0 bits (27), Expect = 3e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 619 ttgttccagaccattcatagatctcaacagagtattcca 657
|||| |||||||| ||||| |||||||||||||||||||
Sbjct: 432 ttgtcccagaccactcataaatctcaacagagtattcca 394
Score = 42.1 bits (21), Expect = 0.11
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 884 ccgagcattatttcttgcctgcataaccgaaac 916
||||||||||||||| ||||| ||||| |||||
Sbjct: 167 ccgagcattatttctcgcctgtataactgaaac 135
>gb|AL382618.1|AL382618 MtBC09A02R1 MtBC Medicago truncatula cDNA clone MtBC09A02 T7, mRNA
sequence
Length = 409
Score = 52.0 bits (26), Expect = 1e-004
Identities = 71/86 (82%)
Strand = Plus / Minus
Query: 420 ggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaactttgaac 479
||||||||||||| ||||| || | |||||||| || || | ||||| |||||||||
Sbjct: 102 ggaatctgctttgctaaagataagcttgtatatccaagtctatcatactccactttgaac 43
Query: 480 tggaaaactccgtagacatcaggaac 505
|||||||| || |||||||| |||||
Sbjct: 42 tggaaaaccccatagacatctggaac 17
>gb|BG644390.1|BG644390 EST506009 KV3 Medicago truncatula cDNA clone pKV3-37K17 5' end, mRNA
sequence
Length = 689
Score = 50.1 bits (25), Expect = 5e-004
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 1196 ctcatcaaaatcaaccccacactctgtcgcaat 1228
|||||||||||||||||||||||| || |||||
Sbjct: 487 ctcatcaaaatcaaccccacactcagtagcaat 455
>gb|BI270015.1|BI270015 NF003C03FL1F1022 Developing flower Medicago truncatula cDNA clone
NF003C03FL 5', mRNA sequence
Length = 645
Score = 44.1 bits (22), Expect = 0.029
Identities = 97/122 (79%)
Strand = Plus / Minus
Query: 642 tcaacagagtattccaggtcatcgttaatgcggtacatgcctggttcattggtctcccca 701
|||||||||||||||| |||||||| || | || || |||||| || || ||||||
Sbjct: 641 tcaacagagtattccaaatcatcgttgatcctatagatagatggttcgttagtttcccca 582
Query: 702 accttgtggtgcttaacattaacagccttaaggtgccccctctcatggaagacccatttg 761
|| |||||||| | ||||| || ||||| ||||| || || || ||||| |||||||||
Sbjct: 581 actttgtggtgttgcacattcaccgccttgaggtgacctctttcgtggaaaacccatttg 522
Query: 762 ct 763
||
Sbjct: 521 ct 520
Score = 42.1 bits (21), Expect = 0.11
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 884 ccgagcattatttcttgcctgcataaccgaaac 916
||||||||||||||| ||||| ||||| |||||
Sbjct: 399 ccgagcattatttctcgcctgtataactgaaac 367
>gb|AW559410.1|AW559410 EST314458 DSIR Medicago truncatula cDNA clone pDSIR-19A17, mRNA
sequence
Length = 806
Score = 42.1 bits (21), Expect = 0.11
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 884 ccgagcattatttcttgcctgcataaccgaaac 916
||||||||||||||| ||||| ||||| |||||
Sbjct: 631 ccgagcattatttctcgcctgtataactgaaac 599
>gb|BF519814.1|BF519814 EST457278 DSIL Medicago truncatula cDNA clone pDSIL-21D12, mRNA
sequence
Length = 625
Score = 42.1 bits (21), Expect = 0.11
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 884 ccgagcattatttcttgcctgcataaccgaaac 916
||||||||||||||| ||||| ||||| |||||
Sbjct: 554 ccgagcattatttctcgcctgtataactgaaac 522
>gb|DW018880.1|DW018880 EST1227841 MTY Medicago truncatula cDNA clone MTYBC05, mRNA
sequence
Length = 760
Score = 42.1 bits (21), Expect = 0.11
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 884 ccgagcattatttcttgcctgcataaccgaaac 916
||||||||||||||| ||||| ||||| |||||
Sbjct: 753 ccgagcattatttctcgcctgtataactgaaac 721
>gb|BE325065.1|BE325065 NF119G11ST1F1087 Developing stem Medicago truncatula cDNA clone
NF119G11ST 5', mRNA sequence
Length = 643
Score = 40.1 bits (20), Expect = 0.45
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 883 cccgagcattatttcttgcctgcataac 910
|||||||||||||||| ||||| |||||
Sbjct: 617 cccgagcattatttctcgcctgtataac 590
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 287,313
Number of Sequences: 392609
Number of extensions: 287313
Number of successful extensions: 21191
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21112
Number of HSP's gapped (non-prelim): 62
length of query: 1263
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1243
effective length of database: 433,880,813
effective search space: 539313850559
effective search space used: 539313850559
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)