BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.203
(959 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|CT025837.1| Medicago truncatula chromosome 5 clone mth2... 42 0.085
gb|AC154035.19| Medicago truncatula clone mth2-114l13, WORK... 42 0.085
gb|CG921100.1|CG921100 MBECJ92TF mth2 Medicago truncatula g... 40 0.34
gb|CG930458.1|CG930458 MBEHN81TR mth2 Medicago truncatula g... 40 0.34
gb|AW688683.1|AW688683 NF010D07ST1F1000 Developing stem Med... 40 0.34
gb|BE326124.2|BE326124 NF085B04ST1F1030 Developing stem Med... 40 0.34
gb|BI272213.1|BI272213 NF021H03FL1F1031 Developing flower M... 40 0.34
gb|BQ136417.1|BQ136417 NF066G07EC1F1055 Elicited cell cultu... 40 0.34
gb|BQ137953.1|BQ137953 NF007F11PH1F1094 Phoma-infected Medi... 40 0.34
gb|DW018766.1|DW018766 EST1227727 MTY Medicago truncatula c... 40 0.34
gb|AC151526.7| Medicago truncatula clone mth2-78c9, complet... 40 0.34
gb|AC136503.46| Medicago truncatula clone mth2-15n1, comple... 40 0.34
emb|CT009656.1| Medicago truncatula chromosome 5 clone mth2... 40 0.34
>emb|CT025837.1| Medicago truncatula chromosome 5 clone mth2-28f11, COMPLETE SEQUENCE
Length = 99258
Score = 42.1 bits (21), Expect = 0.085
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 274 tggaaatggaaatggaatggg 294
|||||||||||||||||||||
Sbjct: 63682 tggaaatggaaatggaatggg 63702
>gb|AC154035.19| Medicago truncatula clone mth2-114l13, WORKING DRAFT SEQUENCE, 5
ordered pieces
Length = 92662
Score = 42.1 bits (21), Expect = 0.085
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 582 gtcgggggagacggaggcggtgggc 606
||||||||||| |||||||||||||
Sbjct: 92590 gtcgggggagagggaggcggtgggc 92566
>gb|CG921100.1|CG921100 MBECJ92TF mth2 Medicago truncatula genomic clone 26O16, DNA
sequence
Length = 792
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 274 tggaaatggaaatggaatgg 293
||||||||||||||||||||
Sbjct: 638 tggaaatggaaatggaatgg 657
>gb|CG930458.1|CG930458 MBEHN81TR mth2 Medicago truncatula genomic clone 57M18, DNA
sequence
Length = 839
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 274 tggaaatggaaatggaatgg 293
||||||||||||||||||||
Sbjct: 439 tggaaatggaaatggaatgg 458
>gb|AW688683.1|AW688683 NF010D07ST1F1000 Developing stem Medicago truncatula cDNA clone
NF010D07ST 5', mRNA sequence
Length = 681
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 274 tggaaatggaaatggaatgg 293
||||||||||||||||||||
Sbjct: 47 tggaaatggaaatggaatgg 28
>gb|BE326124.2|BE326124 NF085B04ST1F1030 Developing stem Medicago truncatula cDNA clone
NF085B04ST 5', mRNA sequence
Length = 606
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 271 gggtggaaatggaaatggaa 290
||||||||||||||||||||
Sbjct: 420 gggtggaaatggaaatggaa 439
>gb|BI272213.1|BI272213 NF021H03FL1F1031 Developing flower Medicago truncatula cDNA clone
NF021H03FL 5', mRNA sequence
Length = 437
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 271 gggtggaaatggaaatggaa 290
||||||||||||||||||||
Sbjct: 254 gggtggaaatggaaatggaa 273
>gb|BQ136417.1|BQ136417 NF066G07EC1F1055 Elicited cell culture Medicago truncatula cDNA
clone NF066G07EC 5', mRNA sequence
Length = 653
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 274 tggaaatggaaatggaatgg 293
||||||||||||||||||||
Sbjct: 113 tggaaatggaaatggaatgg 94
>gb|BQ137953.1|BQ137953 NF007F11PH1F1094 Phoma-infected Medicago truncatula cDNA clone
NF007F11PH 5', mRNA sequence
Length = 674
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 274 tggaaatggaaatggaatgg 293
||||||||||||||||||||
Sbjct: 98 tggaaatggaaatggaatgg 79
>gb|DW018766.1|DW018766 EST1227727 MTY Medicago truncatula cDNA clone MTYBA68, mRNA
sequence
Length = 802
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 271 gggtggaaatggaaatggaa 290
||||||||||||||||||||
Sbjct: 90 gggtggaaatggaaatggaa 109
>gb|AC151526.7| Medicago truncatula clone mth2-78c9, complete sequence
Length = 134556
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 274 tggaaatggaaatggaatgg 293
||||||||||||||||||||
Sbjct: 41057 tggaaatggaaatggaatgg 41076
>gb|AC136503.46| Medicago truncatula clone mth2-15n1, complete sequence
Length = 117475
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 271 gggtggaaatggaaatggaa 290
||||||||||||||||||||
Sbjct: 60281 gggtggaaatggaaatggaa 60300
>emb|CT009656.1| Medicago truncatula chromosome 5 clone mth2-154o18, WORKING DRAFT
SEQUENCE
Length = 107180
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 288 gaatgggatggaatcgttca 307
||||||||||||||||||||
Sbjct: 27419 gaatgggatggaatcgttca 27438
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 117,354
Number of Sequences: 392609
Number of extensions: 117354
Number of successful extensions: 9153
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9116
Number of HSP's gapped (non-prelim): 37
length of query: 959
length of database: 441,732,993
effective HSP length: 20
effective length of query: 939
effective length of database: 433,880,813
effective search space: 407414083407
effective search space used: 407414083407
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)