BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.170
(744 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|CT030192.6| M.truncatula DNA sequence from clone MTH2-1... 60 3e-007
gb|BF640885.1|BF640885 NF050D12IN1F1101 Insect herbivory Me... 50 3e-004
gb|CX542164.1|CX542164 s13dNF86A08GS055_467636 Germinating ... 50 3e-004
gb|AW329273.2|AW329273 N200493e rootphos(-) Medicago trunca... 48 0.001
gb|AL374004.1|AL374004 MtBB04B02F1 MtBB Medicago truncatula... 48 0.001
gb|BF636246.1|BF636246 NF059A07DT1F1052 Drought Medicago tr... 48 0.001
gb|BE249354.2|BE249354 NF014E10LF1F1082 Developing leaf Med... 48 0.001
gb|BG582102.1|BG582102 EST483840 GVN Medicago truncatula cD... 48 0.001
gb|BG582103.1|BG582103 EST483841 GVN Medicago truncatula cD... 48 0.001
gb|BG647007.1|BG647007 EST508626 HOGA Medicago truncatula c... 48 0.001
gb|BI266886.1|BI266886 NF094H07IN1F1064 Insect herbivory Me... 48 0.001
gb|BI272316.1|BI272316 NF017C11FL1F1085 Developing flower M... 48 0.001
gb|BQ124258.1|BQ124258 EST609834 GLSD Medicago truncatula c... 48 0.001
gb|BQ124409.1|BQ124409 EST609985 GLSD Medicago truncatula c... 48 0.001
gb|BQ750503.1|BQ750503 EST633239 KVKC Medicago truncatula c... 48 0.001
gb|CB893980.1|CB893980 EST646772 HOGA Medicago truncatula c... 48 0.001
gb|CA922986.1|CA922986 EST640704 MTUS Medicago truncatula c... 48 0.001
gb|AC131455.5| Medicago truncatula clone mth1-42h9, complet... 48 0.001
gb|AC124972.41| Medicago truncatula clone mth2-24j4, comple... 48 0.001
gb|AQ580029.1|AQ580029 T135582b shotgun sub-library of BAC ... 46 0.004
gb|AQ580105.1|AQ580105 T135662b shotgun sub-library of BAC ... 46 0.004
gb|AC147429.9| Medicago truncatula clone mth2-24m22, WORKIN... 46 0.004
gb|BF003223.1|BF003223 EST431771 KV1 Medicago truncatula cD... 44 0.017
gb|BI311950.1|BI311950 EST5313700 GESD Medicago truncatula ... 44 0.017
gb|AC174344.6| Medicago truncatula clone mth2-167b8, WORKIN... 44 0.017
>emb|CT030192.6| M.truncatula DNA sequence from clone MTH2-16D16 on chromosome 3,
complete sequence
Length = 112216
Score = 60.0 bits (30), Expect = 3e-007
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 134 gacttctacatgtgtgcacatgctgggatgattg 167
|||||||||||||||||||||||||||| |||||
Sbjct: 52763 gacttctacatgtgtgcacatgctgggaggattg 52796
>gb|BF640885.1|BF640885 NF050D12IN1F1101 Insect herbivory Medicago truncatula cDNA clone
NF050D12IN 5', mRNA sequence
Length = 677
Score = 50.1 bits (25), Expect = 3e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 233 caggagtttgttcattcgctctcttacgtgtaccagaggagcacgacagccatctcagtg 292
|||||| |||||||||| || || || || ||||||||||||||||| || || |||||
Sbjct: 430 caggagcttgttcattccctgtcatatgtttaccagaggagcacgactgctatttcagtt 489
Query: 293 gttgc 297
|||||
Sbjct: 490 gttgc 494
Score = 46.1 bits (23), Expect = 0.004
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 26 attgttgctcaaaagaaccnccacac 51
||||||||||||||||||| ||||||
Sbjct: 223 attgttgctcaaaagaaccaccacac 248
>gb|CX542164.1|CX542164 s13dNF86A08GS055_467636 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 564
Score = 50.1 bits (25), Expect = 3e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 233 caggagtttgttcattcgctctcttacgtgtaccagaggagcacgacagccatctcagtg 292
|||||| |||||||||| || || || || ||||||||||||||||| || || |||||
Sbjct: 467 caggagcttgttcattccctgtcatatgtttaccagaggagcacgactgctatttcagtt 526
Query: 293 gttgc 297
|||||
Sbjct: 527 gttgc 531
Score = 46.1 bits (23), Expect = 0.004
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 26 attgttgctcaaaagaaccnccacac 51
||||||||||||||||||| ||||||
Sbjct: 260 attgttgctcaaaagaaccaccacac 285
>gb|AW329273.2|AW329273 N200493e rootphos(-) Medicago truncatula cDNA clone MHRP-18C1, mRNA
sequence
Length = 588
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 137 ttctacatgtgtgcacatgctgggatgattgg 168
|||||||||||||| |||||||| ||||||||
Sbjct: 152 ttctacatgtgtgctcatgctggaatgattgg 183
>gb|AL374004.1|AL374004 MtBB04B02F1 MtBB Medicago truncatula cDNA clone MtBB04B02 T3, mRNA
sequence
Length = 492
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 137 ttctacatgtgtgcacatgctgggatgattgg 168
|||||||||||||| |||||||| ||||||||
Sbjct: 193 ttctacatgtgtgctcatgctggaatgattgg 224
>gb|BF636246.1|BF636246 NF059A07DT1F1052 Drought Medicago truncatula cDNA clone NF059A07DT
5', mRNA sequence
Length = 683
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 137 ttctacatgtgtgcacatgctgggatgattgg 168
|||||||||||||| |||||||| ||||||||
Sbjct: 596 ttctacatgtgtgctcatgctggaatgattgg 627
>gb|BE249354.2|BE249354 NF014E10LF1F1082 Developing leaf Medicago truncatula cDNA clone
NF014E10LF 5', mRNA sequence
Length = 646
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 137 ttctacatgtgtgcacatgctgggatgattgg 168
|||||||||||||| |||||||| ||||||||
Sbjct: 115 ttctacatgtgtgctcatgctggaatgattgg 146
>gb|BG582102.1|BG582102 EST483840 GVN Medicago truncatula cDNA clone pGVN-66P23 5' end,
mRNA sequence
Length = 824
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 137 ttctacatgtgtgcacatgctgggatgattgg 168
|||||||||||||| |||||||| ||||||||
Sbjct: 456 ttctacatgtgtgctcatgctggaatgattgg 487
>gb|BG582103.1|BG582103 EST483841 GVN Medicago truncatula cDNA clone pGVN-66B2 5' end, mRNA
sequence
Length = 830
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 137 ttctacatgtgtgcacatgctgggatgattgg 168
|||||||||||||| |||||||| ||||||||
Sbjct: 455 ttctacatgtgtgctcatgctggaatgattgg 486
>gb|BG647007.1|BG647007 EST508626 HOGA Medicago truncatula cDNA clone pHOGA-15M6 5' end,
mRNA sequence
Length = 616
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 137 ttctacatgtgtgcacatgctgggatgattgg 168
|||||||||||||| |||||||| ||||||||
Sbjct: 162 ttctacatgtgtgctcatgctggaatgattgg 193
>gb|BI266886.1|BI266886 NF094H07IN1F1064 Insect herbivory Medicago truncatula cDNA clone
NF094H07IN 5', mRNA sequence
Length = 642
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 137 ttctacatgtgtgcacatgctgggatgattgg 168
|||||||||||||| |||||||| ||||||||
Sbjct: 210 ttctacatgtgtgctcatgctggaatgattgg 241
>gb|BI272316.1|BI272316 NF017C11FL1F1085 Developing flower Medicago truncatula cDNA clone
NF017C11FL 5', mRNA sequence
Length = 689
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 137 ttctacatgtgtgcacatgctgggatgattgg 168
|||||||||||||| |||||||| ||||||||
Sbjct: 516 ttctacatgtgtgctcatgctggaatgattgg 547
>gb|BQ124258.1|BQ124258 EST609834 GLSD Medicago truncatula cDNA clone pGLSD-34D22, mRNA
sequence
Length = 722
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 137 ttctacatgtgtgcacatgctgggatgattgg 168
|||||||||||||| |||||||| ||||||||
Sbjct: 164 ttctacatgtgtgctcatgctggaatgattgg 195
>gb|BQ124409.1|BQ124409 EST609985 GLSD Medicago truncatula cDNA clone pGLSD-35A4, mRNA
sequence
Length = 622
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 137 ttctacatgtgtgcacatgctgggatgattgg 168
|||||||||||||| |||||||| ||||||||
Sbjct: 427 ttctacatgtgtgctcatgctggaatgattgg 458
>gb|BQ750503.1|BQ750503 EST633239 KVKC Medicago truncatula cDNA, mRNA sequence
Length = 783
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 137 ttctacatgtgtgcacatgctgggatgattgg 168
|||||||||||||| |||||||| ||||||||
Sbjct: 643 ttctacatgtgtgctcatgctggaatgattgg 612
>gb|CB893980.1|CB893980 EST646772 HOGA Medicago truncatula cDNA clone HOGA-29L17, mRNA
sequence
Length = 794
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 137 ttctacatgtgtgcacatgctgggatgattgg 168
|||||||||||||| |||||||| ||||||||
Sbjct: 188 ttctacatgtgtgctcatgctggaatgattgg 219
>gb|CA922986.1|CA922986 EST640704 MTUS Medicago truncatula cDNA clone MTUS-61C12, mRNA
sequence
Length = 786
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 137 ttctacatgtgtgcacatgctgggatgattgg 168
|||||||||||||| |||||||| ||||||||
Sbjct: 647 ttctacatgtgtgctcatgctggaatgattgg 616
>gb|AC131455.5| Medicago truncatula clone mth1-42h9, complete sequence
Length = 96063
Score = 48.1 bits (24), Expect = 0.001
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 92 ggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttctacatgtgtgca 151
|||||||| ||||| || ||| |||||||||||| ||| | || || || ||||||||
Sbjct: 87809 ggaactgttgtggacagcaaaatttgccatcctaggaattatgatttttatatgtgtgct 87868
Query: 152 catgctgggatgattg 167
|||||||| |||||||
Sbjct: 87869 catgctggaatgattg 87884
Score = 46.1 bits (23), Expect = 0.004
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 137 ttctacatgtgtgcacatgctgggatgattg 167
|||||||||||||| |||||||| |||||||
Sbjct: 79736 ttctacatgtgtgctcatgctggaatgattg 79766
>gb|AC124972.41| Medicago truncatula clone mth2-24j4, complete sequence
Length = 124069
Score = 48.1 bits (24), Expect = 0.001
Identities = 63/76 (82%)
Strand = Plus / Minus
Query: 92 ggaactgtggtggatagtaaagtttgccatcctaagaacttcgacttctacatgtgtgca 151
|||||||| ||||| || ||| |||||||||||| ||| | || || || ||||||||
Sbjct: 66067 ggaactgttgtggacagcaaaatttgccatcctaggaattatgatttttatatgtgtgct 66008
Query: 152 catgctgggatgattg 167
|||||||| |||||||
Sbjct: 66007 catgctggaatgattg 65992
Score = 46.1 bits (23), Expect = 0.004
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 137 ttctacatgtgtgcacatgctgggatgattg 167
|||||||||||||| |||||||| |||||||
Sbjct: 74140 ttctacatgtgtgctcatgctggaatgattg 74110
>gb|AQ580029.1|AQ580029 T135582b shotgun sub-library of BAC clone 42H09 Medicago truncatula
genomic clone 42-H-09-C-006, DNA sequence
Length = 523
Score = 46.1 bits (23), Expect = 0.004
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 137 ttctacatgtgtgcacatgctgggatgattg 167
|||||||||||||| |||||||| |||||||
Sbjct: 518 ttctacatgtgtgctcatgctggaatgattg 488
>gb|AQ580105.1|AQ580105 T135662b shotgun sub-library of BAC clone 42H09 Medicago truncatula
genomic clone 42-H-09-C-086, DNA sequence
Length = 447
Score = 46.1 bits (23), Expect = 0.004
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 137 ttctacatgtgtgcacatgctgggatgattg 167
|||||||||||||| |||||||| |||||||
Sbjct: 326 ttctacatgtgtgctcatgctggaatgattg 296
>gb|AC147429.9| Medicago truncatula clone mth2-24m22, WORKING DRAFT SEQUENCE, 7
unordered pieces
Length = 29702
Score = 46.1 bits (23), Expect = 0.004
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 26 attgttgctcaaaagaaccnccacac 51
||||||||||||||||||| ||||||
Sbjct: 9084 attgttgctcaaaagaaccaccacac 9109
>gb|BF003223.1|BF003223 EST431771 KV1 Medicago truncatula cDNA clone pKV1-3E1, mRNA
sequence
Length = 397
Score = 44.1 bits (22), Expect = 0.017
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 240 ttgttcattcgctctcttacgtgtaccagaggagcacgacagccatctcagtggttgc 297
|||||||||| || || || || ||||||||||||||||| || || ||||| |||||
Sbjct: 287 ttgttcattccctgtcatatgtttaccagaggagcacgactgctatttcagttgttgc 344
Score = 40.1 bits (20), Expect = 0.26
Identities = 53/64 (82%)
Strand = Plus / Plus
Query: 137 ttctacatgtgtgcacatgctgggatgattggaacaacaaggcccacccactatcatgtt 196
|||||| | ||||| |||||||||||||| || || | ||||| |||||||| |||||
Sbjct: 184 ttctacctctgtgctcatgctgggatgataggcaccagtaggcctacccactaccatgtg 243
Query: 197 ctgc 200
||||
Sbjct: 244 ctgc 247
>gb|BI311950.1|BI311950 EST5313700 GESD Medicago truncatula cDNA clone pGESD16D7 5' end,
mRNA sequence
Length = 592
Score = 44.1 bits (22), Expect = 0.017
Identities = 64/78 (82%)
Strand = Plus / Plus
Query: 96 ctgtggtggatagtaaagtttgccatcctaagaacttcgacttctacatgtgtgcacatg 155
|||| ||||| || ||| |||||||||||| ||| | || || || |||||||| ||||
Sbjct: 1 ctgttgtggacagcaaaatttgccatcctaggaattatgatttttatatgtgtgctcatg 60
Query: 156 ctgggatgattggaacaa 173
|||| |||||||| ||||
Sbjct: 61 ctggaatgattggtacaa 78
>gb|AC174344.6| Medicago truncatula clone mth2-167b8, WORKING DRAFT SEQUENCE, 24
unordered pieces
Length = 100955
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 585 cagaaccaaacaatcaaaacca 606
||||||||||||||||||||||
Sbjct: 2551 cagaaccaaacaatcaaaacca 2530
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 163,738
Number of Sequences: 392609
Number of extensions: 163738
Number of successful extensions: 11009
Number of sequences better than 0.5: 25
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10955
Number of HSP's gapped (non-prelim): 54
length of query: 744
length of database: 441,732,993
effective HSP length: 19
effective length of query: 725
effective length of database: 434,273,422
effective search space: 314848230950
effective search space used: 314848230950
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)