BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Y13733
(1516 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF083332.1|AF083332 Medicago sativa cinnamyl-alcohol deh... 56 8e-008
emb|Z19573.1|MSCIALDHA M.sativa encoding cinnamyl alcohol d... 56 8e-008
gb|L46857.1|ALFCAD1B Medicago sativa cinnamyl-alcohol dehyd... 56 8e-008
gb|CO512582.1|CO512582 s13dSG08H0300028_121090 Glandular tr... 32 1.1
gb|CO513420.1|CO513420 s13dSG38H0600048_130004 Glandular tr... 32 1.1
gb|CO514299.1|CO514299 s13dSG76G1100084_157260 Glandular tr... 32 1.1
gb|CO514340.1|CO514340 s13dSG84D0100010_157342 Glandular tr... 32 1.1
gb|CO515804.1|CO515804 s13dSG54C0400023_421147 Glandular tr... 32 1.1
gb|CO516481.1|CO516481 s13dSG28D0900076_446290 Glandular tr... 32 1.1
gb|CO517228.1|CO517228 s13dSG32C0800066_486052 Glandular tr... 32 1.1
gb|AJ888503.1|AJ888503 AJ888503 Medicago sativa subsp. x va... 32 1.1
gb|CO512041.1|CO512041 s13dSG18B0800061_108402 Glandular tr... 30 4.3
gb|CO512824.1|CO512824 s13dSG20B0800061_121574 Glandular tr... 30 4.3
gb|CO513107.1|CO513107 s13dSG89H0800064_122140 Glandular tr... 30 4.3
gb|CO513353.1|CO513353 s13dSG38A0500033_129870 Glandular tr... 30 4.3
gb|CO513387.1|CO513387 s13dSG38E0100003_129938 Glandular tr... 30 4.3
gb|CO513432.1|CO513432 s13dSG10B0200013_130028 Glandular tr... 30 4.3
gb|CO513586.1|CO513586 s13dSG16C0400022_139954 Glandular tr... 30 4.3
gb|CO513944.1|CO513944 s13dSG71E0200007_156550 Glandular tr... 30 4.3
gb|CO514642.1|CO514642 s13dSG46C0800066_327944 Glandular tr... 30 4.3
gb|CO514680.1|CO514680 s13dSG46G0900072_328020 Glandular tr... 30 4.3
gb|CO514912.1|CO514912 s13dSG56H0600060_328484 Glandular tr... 30 4.3
gb|CO515282.1|CO515282 s13dSG48B0200025_417623 Glandular tr... 30 4.3
gb|CO515596.1|CO515596 s13dSG47C1000082_418251 Glandular tr... 30 4.3
gb|CO515779.1|CO515779 s13dSG77G0800068_419707 Glandular tr... 30 4.3
gb|CO515828.1|CO515828 s13dSG54E0800065_421195 Glandular tr... 30 4.3
gb|CO515903.1|CO515903 s13dSG91E1200097_421345 Glandular tr... 30 4.3
gb|CO516888.1|CO516888 s13dSG58B0200013_468322 Glandular tr... 30 4.3
gb|CO516940.1|CO516940 s13dSG58G0800066_468426 Glandular tr... 30 4.3
gb|CO517251.1|CO517251 s13dSG32F0300031_486098 Glandular tr... 30 4.3
gb|CO517263.1|CO517263 s13dSG32G0500040_486122 Glandular tr... 30 4.3
emb|X59930.1|MFSTRESS M.falcata mRNA for environmental stre... 30 4.3
gb|AF083333.1|AF083333 Medicago sativa cinnamyl-alcohol deh... 30 4.3
gb|AF432225.1| Medicago sativa GSK-3-like protein MsK4 mRNA... 30 4.3
emb|Z11498.1|MSRRN26S M.sativa 26S rRNA 30 4.3
emb|AX774637.1| Sequence 2 from Patent WO03035856 30 4.3
gb|AF417491.1| Medicago sativa RING-H2 protein (RH2-1) gene... 30 4.3
gb|L46856.1|ALFCAD1A Medicago sativa cinnamyl-alcohol dehyd... 30 4.3
>gb|AF083332.1|AF083332 Medicago sativa cinnamyl-alcohol dehydrogenase (MsaCad2) mRNA,
complete cds
Length = 1324
Score = 56.0 bits (28), Expect = 8e-008
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 456 ttgagcagtactgcaacaagaagatctggtcatacaacgacgtctacactga 507
||||||| ||||| ||||||||||||||||| ||||| || || ||||||||
Sbjct: 388 ttgagcaatactgtaacaagaagatctggtcttacaatgatgtttacactga 439
>emb|Z19573.1|MSCIALDHA M.sativa encoding cinnamyl alcohol dehydrogenase
Length = 1321
Score = 56.0 bits (28), Expect = 8e-008
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 456 ttgagcagtactgcaacaagaagatctggtcatacaacgacgtctacactga 507
||||||| ||||| ||||||||||||||||| ||||| || || ||||||||
Sbjct: 412 ttgagcaatactgtaacaagaagatctggtcttacaatgatgtttacactga 463
>gb|L46857.1|ALFCAD1B Medicago sativa cinnamyl-alcohol dehydrogenase (cad1) mRNA, partial
cds
Length = 1201
Score = 56.0 bits (28), Expect = 8e-008
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 456 ttgagcagtactgcaacaagaagatctggtcatacaacgacgtctacactga 507
||||||| ||||| ||||||||||||||||| ||||| || || ||||||||
Sbjct: 265 ttgagcaatactgtaacaagaagatctggtcttacaatgatgtttacactga 316
>gb|CO512582.1|CO512582 s13dSG08H0300028_121090 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 593
Score = 32.2 bits (16), Expect = 1.1
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 1158 accgcttcgtcgtcgacgtcgccg 1181
|||||| ||||||||||| |||||
Sbjct: 86 accgctccgtcgtcgacgccgccg 109
>gb|CO513420.1|CO513420 s13dSG38H0600048_130004 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 454
Score = 32.2 bits (16), Expect = 1.1
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 1158 accgcttcgtcgtcgacgtcgccg 1181
|||||| ||||||||||| |||||
Sbjct: 7 accgctccgtcgtcgacgccgccg 30
>gb|CO514299.1|CO514299 s13dSG76G1100084_157260 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 584
Score = 32.2 bits (16), Expect = 1.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 236 gtggtggtgaaggtgc 251
||||||||||||||||
Sbjct: 208 gtggtggtgaaggtgc 193
>gb|CO514340.1|CO514340 s13dSG84D0100010_157342 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 456
Score = 32.2 bits (16), Expect = 1.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 236 gtggtggtgaaggtgc 251
||||||||||||||||
Sbjct: 208 gtggtggtgaaggtgc 193
>gb|CO515804.1|CO515804 s13dSG54C0400023_421147 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 420
Score = 32.2 bits (16), Expect = 1.1
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 1195 ggcggaggcggcggcggcgg 1214
||||| ||||||||||||||
Sbjct: 143 ggcggcggcggcggcggcgg 124
>gb|CO516481.1|CO516481 s13dSG28D0900076_446290 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 557
Score = 32.2 bits (16), Expect = 1.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 236 gtggtggtgaaggtgc 251
||||||||||||||||
Sbjct: 208 gtggtggtgaaggtgc 193
>gb|CO517228.1|CO517228 s13dSG32C0800066_486052 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 622
Score = 32.2 bits (16), Expect = 1.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 237 tggtggtgaaggtgct 252
||||||||||||||||
Sbjct: 530 tggtggtgaaggtgct 515
>gb|AJ888503.1|AJ888503 AJ888503 Medicago sativa subsp. x varia 4-day-old Medicago sativa
subsp. x varia cDNA, mRNA sequence
Length = 795
Score = 32.2 bits (16), Expect = 1.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 831 ccgcggccatggcggc 846
||||||||||||||||
Sbjct: 42 ccgcggccatggcggc 27
>gb|CO512041.1|CO512041 s13dSG18B0800061_108402 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 194
Score = 30.2 bits (15), Expect = 4.3
Identities = 25/27 (92%), Gaps = 1/27 (3%)
Strand = Plus / Minus
Query: 165 gggccgccagggacgccaccggacacc 191
|||||||||||| || |||||||||||
Sbjct: 58 gggccgccaggggcg-caccggacacc 33
>gb|CO512824.1|CO512824 s13dSG20B0800061_121574 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 596
Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 532 cgcctccaccatggt 546
|||||||||||||||
Sbjct: 512 cgcctccaccatggt 498
>gb|CO513107.1|CO513107 s13dSG89H0800064_122140 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 246
Score = 30.2 bits (15), Expect = 4.3
Identities = 25/27 (92%), Gaps = 1/27 (3%)
Strand = Plus / Minus
Query: 165 gggccgccagggacgccaccggacacc 191
|||||||||||| || |||||||||||
Sbjct: 132 gggccgccaggggcg-caccggacacc 107
>gb|CO513353.1|CO513353 s13dSG38A0500033_129870 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 452
Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 532 cgcctccaccatggt 546
|||||||||||||||
Sbjct: 86 cgcctccaccatggt 72
>gb|CO513387.1|CO513387 s13dSG38E0100003_129938 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 454
Score = 30.2 bits (15), Expect = 4.3
Identities = 25/27 (92%), Gaps = 1/27 (3%)
Strand = Plus / Minus
Query: 165 gggccgccagggacgccaccggacacc 191
|||||||||||| || |||||||||||
Sbjct: 36 gggccgccaggggcg-caccggacacc 11
>gb|CO513432.1|CO513432 s13dSG10B0200013_130028 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 111
Score = 30.2 bits (15), Expect = 4.3
Identities = 25/27 (92%), Gaps = 1/27 (3%)
Strand = Plus / Plus
Query: 165 gggccgccagggacgccaccggacacc 191
|||||||||||| || |||||||||||
Sbjct: 81 gggccgccaggggcg-caccggacacc 106
>gb|CO513586.1|CO513586 s13dSG16C0400022_139954 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 583
Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1216 tgcggccagcaactg 1230
|||||||||||||||
Sbjct: 149 tgcggccagcaactg 135
>gb|CO513944.1|CO513944 s13dSG71E0200007_156550 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 191
Score = 30.2 bits (15), Expect = 4.3
Identities = 25/27 (92%), Gaps = 1/27 (3%)
Strand = Plus / Minus
Query: 165 gggccgccagggacgccaccggacacc 191
|||||||||||| || |||||||||||
Sbjct: 55 gggccgccaggggcg-caccggacacc 30
>gb|CO514642.1|CO514642 s13dSG46C0800066_327944 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 450
Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 532 cgcctccaccatggt 546
|||||||||||||||
Sbjct: 440 cgcctccaccatggt 426
>gb|CO514680.1|CO514680 s13dSG46G0900072_328020 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 512
Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1021 cttcatcggcagcat 1035
|||||||||||||||
Sbjct: 332 cttcatcggcagcat 318
>gb|CO514912.1|CO514912 s13dSG56H0600060_328484 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 614
Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1216 tgcggccagcaactg 1230
|||||||||||||||
Sbjct: 147 tgcggccagcaactg 133
>gb|CO515282.1|CO515282 s13dSG48B0200025_417623 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 581
Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 916 gctgctgaagctgga 930
|||||||||||||||
Sbjct: 274 gctgctgaagctgga 288
>gb|CO515596.1|CO515596 s13dSG47C1000082_418251 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 596
Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 532 cgcctccaccatggt 546
|||||||||||||||
Sbjct: 440 cgcctccaccatggt 426
>gb|CO515779.1|CO515779 s13dSG77G0800068_419707 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 469
Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 532 cgcctccaccatggt 546
|||||||||||||||
Sbjct: 108 cgcctccaccatggt 94
>gb|CO515828.1|CO515828 s13dSG54E0800065_421195 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 483
Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 532 cgcctccaccatggt 546
|||||||||||||||
Sbjct: 154 cgcctccaccatggt 140
>gb|CO515903.1|CO515903 s13dSG91E1200097_421345 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 552
Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1216 tgcggccagcaactg 1230
|||||||||||||||
Sbjct: 149 tgcggccagcaactg 135
>gb|CO516888.1|CO516888 s13dSG58B0200013_468322 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 343
Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1021 cttcatcggcagcat 1035
|||||||||||||||
Sbjct: 323 cttcatcggcagcat 309
>gb|CO516940.1|CO516940 s13dSG58G0800066_468426 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 491
Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 532 cgcctccaccatggt 546
|||||||||||||||
Sbjct: 333 cgcctccaccatggt 319
>gb|CO517251.1|CO517251 s13dSG32F0300031_486098 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 570
Score = 30.2 bits (15), Expect = 4.3
Identities = 25/27 (92%), Gaps = 1/27 (3%)
Strand = Plus / Plus
Query: 165 gggccgccagggacgccaccggacacc 191
|||||||||||| || |||||||||||
Sbjct: 228 gggccgccaggggcg-caccggacacc 253
>gb|CO517263.1|CO517263 s13dSG32G0500040_486122 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 528
Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 532 cgcctccaccatggt 546
|||||||||||||||
Sbjct: 422 cgcctccaccatggt 436
>emb|X59930.1|MFSTRESS M.falcata mRNA for environmental stress and abscisic acid inducible
protein
Length = 679
Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 532 cgcctccaccatggt 546
|||||||||||||||
Sbjct: 378 cgcctccaccatggt 364
Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 532 cgcctccaccatggt 546
|||||||||||||||
Sbjct: 342 cgcctccaccatggt 328
>gb|AF083333.1|AF083333 Medicago sativa cinnamyl-alcohol dehydrogenase (MsaCad1) mRNA,
complete cds
Length = 1390
Score = 30.2 bits (15), Expect = 4.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 861 tggactacatcatcgacac 879
||||||||||||| |||||
Sbjct: 841 tggactacatcatagacac 859
>gb|AF432225.1| Medicago sativa GSK-3-like protein MsK4 mRNA, complete cds
Length = 1850
Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 779 gcggaggcaatggac 793
|||||||||||||||
Sbjct: 1485 gcggaggcaatggac 1471
>emb|Z11498.1|MSRRN26S M.sativa 26S rRNA
Length = 1617
Score = 30.2 bits (15), Expect = 4.3
Identities = 25/27 (92%), Gaps = 1/27 (3%)
Strand = Plus / Minus
Query: 165 gggccgccagggacgccaccggacacc 191
|||||||||||| || |||||||||||
Sbjct: 115 gggccgccaggggcg-caccggacacc 90
>emb|AX774637.1| Sequence 2 from Patent WO03035856
Length = 1866
Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 779 gcggaggcaatggac 793
|||||||||||||||
Sbjct: 1485 gcggaggcaatggac 1471
>gb|AF417491.1| Medicago sativa RING-H2 protein (RH2-1) gene, complete cds
Length = 3970
Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 88 ctccgtcgtcgtcgt 102
|||||||||||||||
Sbjct: 2573 ctccgtcgtcgtcgt 2587
>gb|L46856.1|ALFCAD1A Medicago sativa cinnamyl-alcohol dehydrogenase (cad1) mRNA,
complete cds
Length = 1390
Score = 30.2 bits (15), Expect = 4.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 861 tggactacatcatcgacac 879
||||||||||||| |||||
Sbjct: 841 tggactacatcatagacac 859
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: May 2, 2006 2:40 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1870
Number of Sequences: 7669
Number of extensions: 1870
Number of successful extensions: 469
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 416
Number of HSP's gapped (non-prelim): 57
length of query: 1516
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1500
effective length of database: 3,623,002
effective search space: 5434503000
effective search space used: 5434503000
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)