BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCS9f07.yg.2.1
(394 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY082444.1| Medicago sativa clone MS1-3FTa alpha 1,3 fuc... 68 5e-012
gb|AY082445.1| Medicago sativa clone MS1-3FTb alpha 1,3 fuc... 68 5e-012
gb|AY662340.1| Medicago sativa cystathionine gamma synthase... 34 0.070
gb|CO511737.1|CO511737 s13dSG01E0500039_103374 Glandular tr... 28 4.3
gb|CO513328.1|CO513328 s13dSG37G0200008_129820 Glandular tr... 28 4.3
gb|CO516751.1|CO516751 s13dSG74H0900078_446830 Glandular tr... 28 4.3
gb|CO516879.1|CO516879 s13dSG58A0400021_468304 Glandular tr... 28 4.3
gb|CO517176.1|CO517176 s13dSG33E0800067_474436 Glandular tr... 28 4.3
gb|AF020270.1|AF020270 Medicago sativa glyoxysomal malate d... 28 4.3
emb|AJ575100.1|MSA575100 Medicago sativa mRNA for putative ... 28 4.3
>gb|AY082444.1| Medicago sativa clone MS1-3FTa alpha 1,3 fucosyltransferase mRNA,
complete cds
Length = 2027
Score = 67.9 bits (34), Expect = 5e-012
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 321 caaagacgacaagatgaatgaaccgctgccatgtcgataagagctttgaaagaatcagat 380
||||| || ||||||||||| || |||||||| || | ||| ||||||||||||||||||
Sbjct: 1316 caaaggcggcaagatgaatgtacagctgccatatccacaagggctttgaaagaatcagat 1257
Query: 381 ggaccatcatactt 394
|| || ||||||||
Sbjct: 1256 ggcccttcatactt 1243
Score = 32.2 bits (16), Expect = 0.28
Identities = 25/28 (89%)
Strand = Plus / Minus
Query: 89 cttccatacaggaacgtggttgagggac 116
||||||||||||||| || || ||||||
Sbjct: 1548 cttccatacaggaacatgattcagggac 1521
>gb|AY082445.1| Medicago sativa clone MS1-3FTb alpha 1,3 fucosyltransferase mRNA,
complete cds
Length = 2134
Score = 67.9 bits (34), Expect = 5e-012
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 321 caaagacgacaagatgaatgaaccgctgccatgtcgataagagctttgaaagaatcagat 380
||||| || ||||||||||| || |||||||| || | ||| ||||||||||||||||||
Sbjct: 1316 caaaggcggcaagatgaatgtacagctgccatatccacaagggctttgaaagaatcagat 1257
Query: 381 ggaccatcatactt 394
|| || ||||||||
Sbjct: 1256 ggcccttcatactt 1243
Score = 32.2 bits (16), Expect = 0.28
Identities = 25/28 (89%)
Strand = Plus / Minus
Query: 89 cttccatacaggaacgtggttgagggac 116
||||||||||||||| || || ||||||
Sbjct: 1548 cttccatacaggaacatgattcagggac 1521
>gb|AY662340.1| Medicago sativa cystathionine gamma synthase mRNA, partial cds
Length = 610
Score = 34.2 bits (17), Expect = 0.070
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 135 gcagattccaaggctcc 151
|||||||||||||||||
Sbjct: 200 gcagattccaaggctcc 184
>gb|CO511737.1|CO511737 s13dSG01E0500039_103374 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 462
Score = 28.2 bits (14), Expect = 4.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 244 tggaacagctacaa 257
||||||||||||||
Sbjct: 19 tggaacagctacaa 6
>gb|CO513328.1|CO513328 s13dSG37G0200008_129820 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 550
Score = 28.2 bits (14), Expect = 4.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 213 ataaacaagtggta 226
||||||||||||||
Sbjct: 162 ataaacaagtggta 149
>gb|CO516751.1|CO516751 s13dSG74H0900078_446830 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 505
Score = 28.2 bits (14), Expect = 4.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 313 tatgtatacaaaga 326
||||||||||||||
Sbjct: 94 tatgtatacaaaga 107
>gb|CO516879.1|CO516879 s13dSG58A0400021_468304 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 409
Score = 28.2 bits (14), Expect = 4.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 265 ttgtaaattttgga 278
||||||||||||||
Sbjct: 320 ttgtaaattttgga 307
>gb|CO517176.1|CO517176 s13dSG33E0800067_474436 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 638
Score = 28.2 bits (14), Expect = 4.3
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 236 ctttttgctggaacagctacaa 257
||||| ||||||||||| ||||
Sbjct: 524 cttttagctggaacagcaacaa 503
>gb|AF020270.1|AF020270 Medicago sativa glyoxysomal malate dehydrogenase precursor (gmdh)
mRNA, complete cds
Length = 1289
Score = 28.2 bits (14), Expect = 4.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 330 caagatgaatgaac 343
||||||||||||||
Sbjct: 88 caagatgaatgaac 101
>emb|AJ575100.1|MSA575100 Medicago sativa mRNA for putative mitogen-activated protein kinase
1 (mekk1 gene)
Length = 1840
Score = 28.2 bits (14), Expect = 4.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 289 cctttaaatgaatc 302
||||||||||||||
Sbjct: 21 cctttaaatgaatc 34
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: May 2, 2006 2:40 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 652
Number of Sequences: 7669
Number of extensions: 652
Number of successful extensions: 171
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 158
Number of HSP's gapped (non-prelim): 13
length of query: 394
length of database: 3,745,706
effective HSP length: 15
effective length of query: 379
effective length of database: 3,630,671
effective search space: 1376024309
effective search space used: 1376024309
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)