BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCM12g02.yg.2.1
(480 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO515708.1|CO515708 s13dSG60H0700064_419565 Glandular tr... 34 0.086
gb|CO511713.1|CO511713 s13dSG01C0200018_103326 Glandular tr... 32 0.34
>gb|CO515708.1|CO515708 s13dSG60H0700064_419565 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 551
Score = 34.2 bits (17), Expect = 0.086
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 153 attccaagctctattgc 169
|||||||||||||||||
Sbjct: 260 attccaagctctattgc 244
>gb|CO511713.1|CO511713 s13dSG01C0200018_103326 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 287
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 307 ccatggaaaatgtgta 322
||||||||||||||||
Sbjct: 123 ccatggaaaatgtgta 108
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1398
Number of Sequences: 7669
Number of extensions: 1398
Number of successful extensions: 351
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 348
Number of HSP's gapped (non-prelim): 3
length of query: 480
length of database: 3,745,706
effective HSP length: 15
effective length of query: 465
effective length of database: 3,630,671
effective search space: 1688262015
effective search space used: 1688262015
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)