BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCK30g08.yg.2.1
(164 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW698347.1|AW698347 G78 glandular-haired subtracted cDNA... 36 0.007
gb|DQ122784.1| Medicago sativa clone C43 putative splicing ... 36 0.007
gb|AW698345.1|AW698345 G73 glandular-haired subtracted cDNA... 34 0.028
gb|AW698351.1|AW698351 g32 glandular-haired subtracted cDNA... 34 0.028
gb|AW698402.1|AW698402 G249 glandular-haired subtracted cDN... 34 0.028
gb|AW698672.1|AW698672 R103 non-glandular-haired subtracted... 34 0.028
gb|AW698716.1|AW698716 R95 non-glandular-haired subtracted ... 34 0.028
gb|AW698777.1|AW698777 r361 non-glandular-haired subtracted... 34 0.028
gb|AW698341.1|AW698341 G143 glandular-haired subtracted cDN... 32 0.11
gb|AW698350.1|AW698350 g29 glandular-haired subtracted cDNA... 32 0.11
gb|AW698675.1|AW698675 R10 non-glandular-haired subtracted ... 32 0.11
gb|AW698678.1|AW698678 R113 non-glandular-haired subtracted... 32 0.11
gb|AW698679.1|AW698679 R115 non-glandular-haired subtracted... 32 0.11
gb|AW698681.1|AW698681 R11 non-glandular-haired subtracted ... 32 0.11
gb|AW698683.1|AW698683 R121 non-glandular-haired subtracted... 32 0.11
gb|AW698685.1|AW698685 R125 non-glandular-haired subtracted... 32 0.11
gb|AW698715.1|AW698715 R93 non-glandular-haired subtracted ... 32 0.11
gb|AW698717.1|AW698717 R96 non-glandular-haired subtracted ... 32 0.11
gb|AW698718.1|AW698718 R98 non-glandular-haired subtracted ... 32 0.11
gb|AW698731.1|AW698731 r302 non-glandular-haired subtracted... 32 0.11
gb|AW698895.1|AW698895 r3 non-glandular-haired subtracted c... 32 0.11
gb|AW698901.1|AW698901 r97 non-glandular-haired subtracted ... 32 0.11
gb|AW698338.1|AW698338 G1 glandular-haired subtracted cDNA ... 30 0.43
gb|AW698352.1|AW698352 g34 glandular-haired subtracted cDNA... 30 0.43
gb|AW698421.1|AW698421 G270 glandular-haired subtracted cDN... 30 0.43
gb|AW698526.1|AW698526 g320 glandular-haired subtracted cDN... 30 0.43
gb|AW698688.1|AW698688 R12 non-glandular-haired subtracted ... 30 0.43
gb|AW698698.1|AW698698 R146 non-glandular-haired subtracted... 30 0.43
>gb|AW698347.1|AW698347 G78 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 553
Score = 36.2 bits (18), Expect = 0.007
Identities = 25/26 (96%), Gaps = 1/26 (3%)
Strand = Plus / Minus
Query: 140 ggtacctgcc-gggcggccgctcgaa 164
|||||||||| |||||||||||||||
Sbjct: 113 ggtacctgcccgggcggccgctcgaa 88
>gb|DQ122784.1| Medicago sativa clone C43 putative splicing factor Prp8 mRNA,
partial cds
Length = 552
Score = 36.2 bits (18), Expect = 0.007
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 147 gccgggcggccgctcgaa 164
||||||||||||||||||
Sbjct: 486 gccgggcggccgctcgaa 503
>gb|AW698345.1|AW698345 G73 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 407
Score = 34.2 bits (17), Expect = 0.028
Identities = 24/25 (96%), Gaps = 1/25 (4%)
Strand = Plus / Minus
Query: 140 ggtacctgcc-gggcggccgctcga 163
|||||||||| ||||||||||||||
Sbjct: 25 ggtacctgcccgggcggccgctcga 1
>gb|AW698351.1|AW698351 g32 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 327
Score = 34.2 bits (17), Expect = 0.028
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 148 ccgggcggccgctcgaa 164
|||||||||||||||||
Sbjct: 299 ccgggcggccgctcgaa 315
>gb|AW698402.1|AW698402 G249 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 316
Score = 34.2 bits (17), Expect = 0.028
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 148 ccgggcggccgctcgaa 164
|||||||||||||||||
Sbjct: 293 ccgggcggccgctcgaa 309
>gb|AW698672.1|AW698672 R103 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 251
Score = 34.2 bits (17), Expect = 0.028
Identities = 24/25 (96%), Gaps = 1/25 (4%)
Strand = Plus / Minus
Query: 140 ggtacctgcc-gggcggccgctcga 163
|||||||||| ||||||||||||||
Sbjct: 25 ggtacctgcccgggcggccgctcga 1
>gb|AW698716.1|AW698716 R95 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 434
Score = 34.2 bits (17), Expect = 0.028
Identities = 24/25 (96%), Gaps = 1/25 (4%)
Strand = Plus / Minus
Query: 139 aggtacctgcc-gggcggccgctcg 162
||||||||||| |||||||||||||
Sbjct: 25 aggtacctgcccgggcggccgctcg 1
>gb|AW698777.1|AW698777 r361 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 340
Score = 34.2 bits (17), Expect = 0.028
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 148 ccgggcggccgctcgaa 164
|||||||||||||||||
Sbjct: 317 ccgggcggccgctcgaa 333
>gb|AW698341.1|AW698341 G143 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 264
Score = 32.2 bits (16), Expect = 0.11
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 148 ccgggcggccgctcga 163
||||||||||||||||
Sbjct: 249 ccgggcggccgctcga 264
>gb|AW698350.1|AW698350 g29 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 274
Score = 32.2 bits (16), Expect = 0.11
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 148 ccgggcggccgctcga 163
||||||||||||||||
Sbjct: 259 ccgggcggccgctcga 274
>gb|AW698675.1|AW698675 R10 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 289
Score = 32.2 bits (16), Expect = 0.11
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 148 ccgggcggccgctcga 163
||||||||||||||||
Sbjct: 16 ccgggcggccgctcga 1
>gb|AW698678.1|AW698678 R113 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 252
Score = 32.2 bits (16), Expect = 0.11
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 148 ccgggcggccgctcga 163
||||||||||||||||
Sbjct: 237 ccgggcggccgctcga 252
>gb|AW698679.1|AW698679 R115 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 418
Score = 32.2 bits (16), Expect = 0.11
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 148 ccgggcggccgctcga 163
||||||||||||||||
Sbjct: 16 ccgggcggccgctcga 1
>gb|AW698681.1|AW698681 R11 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 168
Score = 32.2 bits (16), Expect = 0.11
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 148 ccgggcggccgctcga 163
||||||||||||||||
Sbjct: 16 ccgggcggccgctcga 1
>gb|AW698683.1|AW698683 R121 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 527
Score = 32.2 bits (16), Expect = 0.11
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 148 ccgggcggccgctcga 163
||||||||||||||||
Sbjct: 16 ccgggcggccgctcga 1
>gb|AW698685.1|AW698685 R125 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 393
Score = 32.2 bits (16), Expect = 0.11
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 148 ccgggcggccgctcga 163
||||||||||||||||
Sbjct: 378 ccgggcggccgctcga 393
>gb|AW698715.1|AW698715 R93 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 440
Score = 32.2 bits (16), Expect = 0.11
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 148 ccgggcggccgctcga 163
||||||||||||||||
Sbjct: 16 ccgggcggccgctcga 1
>gb|AW698717.1|AW698717 R96 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 384
Score = 32.2 bits (16), Expect = 0.11
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 148 ccgggcggccgctcga 163
||||||||||||||||
Sbjct: 369 ccgggcggccgctcga 384
>gb|AW698718.1|AW698718 R98 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 330
Score = 32.2 bits (16), Expect = 0.11
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 148 ccgggcggccgctcga 163
||||||||||||||||
Sbjct: 315 ccgggcggccgctcga 330
>gb|AW698731.1|AW698731 r302 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 149
Score = 32.2 bits (16), Expect = 0.11
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 148 ccgggcggccgctcga 163
||||||||||||||||
Sbjct: 126 ccgggcggccgctcga 141
>gb|AW698895.1|AW698895 r3 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 370
Score = 32.2 bits (16), Expect = 0.11
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 148 ccgggcggccgctcga 163
||||||||||||||||
Sbjct: 355 ccgggcggccgctcga 370
>gb|AW698901.1|AW698901 r97 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 212
Score = 32.2 bits (16), Expect = 0.11
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 148 ccgggcggccgctcga 163
||||||||||||||||
Sbjct: 197 ccgggcggccgctcga 212
>gb|AW698338.1|AW698338 G1 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 483
Score = 30.2 bits (15), Expect = 0.43
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 148 ccgggcggccgctcg 162
|||||||||||||||
Sbjct: 15 ccgggcggccgctcg 1
>gb|AW698352.1|AW698352 g34 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 365
Score = 30.2 bits (15), Expect = 0.43
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 148 ccgggcggccgctcg 162
|||||||||||||||
Sbjct: 15 ccgggcggccgctcg 1
>gb|AW698421.1|AW698421 G270 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 426
Score = 30.2 bits (15), Expect = 0.43
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 148 ccgggcggccgctcg 162
|||||||||||||||
Sbjct: 16 ccgggcggccgctcg 2
>gb|AW698526.1|AW698526 g320 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 223
Score = 30.2 bits (15), Expect = 0.43
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 148 ccgggcggccgctcg 162
|||||||||||||||
Sbjct: 16 ccgggcggccgctcg 2
>gb|AW698688.1|AW698688 R12 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 356
Score = 30.2 bits (15), Expect = 0.43
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 148 ccgggcggccgctcg 162
|||||||||||||||
Sbjct: 15 ccgggcggccgctcg 1
>gb|AW698698.1|AW698698 R146 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 326
Score = 30.2 bits (15), Expect = 0.43
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 148 ccgggcggccgctcg 162
|||||||||||||||
Sbjct: 15 ccgggcggccgctcg 1
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 731
Number of Sequences: 7669
Number of extensions: 731
Number of successful extensions: 129
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99
Number of HSP's gapped (non-prelim): 30
length of query: 164
length of database: 3,745,706
effective HSP length: 15
effective length of query: 149
effective length of database: 3,630,671
effective search space: 540969979
effective search space used: 540969979
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)