BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBS9a01.xg.2.1
(480 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO513965.1|CO513965 s13dSG71G0100004_156592 Glandular tr... 32 0.34
gb|AJ410160.1|AJ410160 AJ410160 Medicago sativa library (Ka... 28 5.3
gb|CO511949.1|CO511949 s13dSG05H0900080_103798 Glandular tr... 28 5.3
gb|CO512077.1|CO512077 s13dSG18F0100011_108474 Glandular tr... 28 5.3
gb|CO512146.1|CO512146 s13dSG34D1200094_108612 Glandular tr... 28 5.3
gb|CO512192.1|CO512192 s13dSG03B0200013_113898 Glandular tr... 28 5.3
gb|CO512255.1|CO512255 s13dSG03G1100084_114024 Glandular tr... 28 5.3
gb|CO512810.1|CO512810 s13dSG20A0400021_121546 Glandular tr... 28 5.3
gb|CO513234.1|CO513234 s13dSG24E0800055_129632 Glandular tr... 28 5.3
gb|CO513273.1|CO513273 s13dSG37A1000069_129710 Glandular tr... 28 5.3
gb|CO513313.1|CO513313 s13dSG37E1100083_129790 Glandular tr... 28 5.3
gb|CO513444.1|CO513444 s13dSG10C0600038_130052 Glandular tr... 28 5.3
gb|CO513493.1|CO513493 s13dSG12A0800053_139768 Glandular tr... 28 5.3
gb|CO514341.1|CO514341 s13dSG84D0400030_157344 Glandular tr... 28 5.3
gb|CO514534.1|CO514534 s13dSG43H0300030_327728 Glandular tr... 28 5.3
gb|CO514894.1|CO514894 s13dSG56F0500047_328448 Glandular tr... 28 5.3
gb|CO515028.1|CO515028 s13dSG26E0900071_397561 Glandular tr... 28 5.3
gb|CO515440.1|CO515440 s13dSG50G0600052_417939 Glandular tr... 28 5.3
gb|CO515476.1|CO515476 s13dSG52A0400033_418011 Glandular tr... 28 5.3
gb|CO515669.1|CO515669 s13dSG60D0600058_419487 Glandular tr... 28 5.3
gb|CO515965.1|CO515965 s13dSG61D0400032_445258 Glandular tr... 28 5.3
gb|CO516159.1|CO516159 s13dSG67A1200097_445646 Glandular tr... 28 5.3
gb|CO516293.1|CO516293 s13dSG69F0900077_445914 Glandular tr... 28 5.3
gb|M93672.1|ALFISDHYA Medicago sativa isocitrate dehydrogen... 28 5.3
gb|U20431.1|MSU20431 Medicago sativa polygalacturonase mRNA... 28 5.3
gb|AF383622.1|AF383622 Medicago sativa early light inducibl... 28 5.3
gb|AF322116.2|AF322116 Medicago sativa sucrose-phosphate sy... 28 5.3
gb|AY219848.1| Medicago sativa polygalactorunase PG11 precu... 28 5.3
gb|AY468362.2| Medicago sativa sucrose-phosphate synthase g... 28 5.3
>gb|CO513965.1|CO513965 s13dSG71G0100004_156592 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 566
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 148 ctgaggcagaaaggca 163
||||||||||||||||
Sbjct: 313 ctgaggcagaaaggca 328
>gb|AJ410160.1|AJ410160 AJ410160 Medicago sativa library (Kalo P) Medicago sativa cDNA
clone U84, mRNA sequence
Length = 824
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 141 gaagaagctgaggc 154
||||||||||||||
Sbjct: 255 gaagaagctgaggc 268
>gb|CO511949.1|CO511949 s13dSG05H0900080_103798 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 615
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 337 gtgtacgacaagaa 350
||||||||||||||
Sbjct: 191 gtgtacgacaagaa 204
>gb|CO512077.1|CO512077 s13dSG18F0100011_108474 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 582
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 359 aaacaccaaacttg 372
||||||||||||||
Sbjct: 348 aaacaccaaacttg 361
>gb|CO512146.1|CO512146 s13dSG34D1200094_108612 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 566
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 337 gtgtacgacaagaa 350
||||||||||||||
Sbjct: 230 gtgtacgacaagaa 243
>gb|CO512192.1|CO512192 s13dSG03B0200013_113898 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 558
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 16 caagacgaagaaga 29
||||||||||||||
Sbjct: 279 caagacgaagaaga 292
>gb|CO512255.1|CO512255 s13dSG03G1100084_114024 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 615
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 337 gtgtacgacaagaa 350
||||||||||||||
Sbjct: 144 gtgtacgacaagaa 157
>gb|CO512810.1|CO512810 s13dSG20A0400021_121546 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 562
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 337 gtgtacgacaagaa 350
||||||||||||||
Sbjct: 231 gtgtacgacaagaa 244
>gb|CO513234.1|CO513234 s13dSG24E0800055_129632 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 582
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 337 gtgtacgacaagaa 350
||||||||||||||
Sbjct: 231 gtgtacgacaagaa 244
>gb|CO513273.1|CO513273 s13dSG37A1000069_129710 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 565
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 337 gtgtacgacaagaa 350
||||||||||||||
Sbjct: 234 gtgtacgacaagaa 247
>gb|CO513313.1|CO513313 s13dSG37E1100083_129790 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 550
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 337 gtgtacgacaagaa 350
||||||||||||||
Sbjct: 234 gtgtacgacaagaa 247
>gb|CO513444.1|CO513444 s13dSG10C0600038_130052 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 507
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 218 ccaccatcagcacc 231
||||||||||||||
Sbjct: 389 ccaccatcagcacc 402
>gb|CO513493.1|CO513493 s13dSG12A0800053_139768 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 565
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 337 gtgtacgacaagaa 350
||||||||||||||
Sbjct: 234 gtgtacgacaagaa 247
>gb|CO514341.1|CO514341 s13dSG84D0400030_157344 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 534
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 65 ggtggtctcaaatt 78
||||||||||||||
Sbjct: 350 ggtggtctcaaatt 337
>gb|CO514534.1|CO514534 s13dSG43H0300030_327728 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 550
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 120 tctatggaactcgtgcat 137
|||||||||||| |||||
Sbjct: 413 tctatggaactcttgcat 396
>gb|CO514894.1|CO514894 s13dSG56F0500047_328448 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 567
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 218 ccaccatcagcacc 231
||||||||||||||
Sbjct: 138 ccaccatcagcacc 151
>gb|CO515028.1|CO515028 s13dSG26E0900071_397561 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 135
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 65 ggtggtctcaaatt 78
||||||||||||||
Sbjct: 74 ggtggtctcaaatt 87
>gb|CO515440.1|CO515440 s13dSG50G0600052_417939 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 424
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 209 gtgcagctcccacc 222
||||||||||||||
Sbjct: 85 gtgcagctcccacc 72
>gb|CO515476.1|CO515476 s13dSG52A0400033_418011 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 494
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 359 aaacaccaaacttg 372
||||||||||||||
Sbjct: 380 aaacaccaaacttg 393
>gb|CO515669.1|CO515669 s13dSG60D0600058_419487 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 524
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 337 gtgtacgacaagaa 350
||||||||||||||
Sbjct: 231 gtgtacgacaagaa 244
>gb|CO515965.1|CO515965 s13dSG61D0400032_445258 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 472
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 337 gtgtacgacaagaa 350
||||||||||||||
Sbjct: 234 gtgtacgacaagaa 247
>gb|CO516159.1|CO516159 s13dSG67A1200097_445646 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 558
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 337 gtgtacgacaagaa 350
||||||||||||||
Sbjct: 231 gtgtacgacaagaa 244
>gb|CO516293.1|CO516293 s13dSG69F0900077_445914 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 520
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 359 aaacaccaaacttg 372
||||||||||||||
Sbjct: 392 aaacaccaaacttg 405
>gb|M93672.1|ALFISDHYA Medicago sativa isocitrate dehydrogenase mRNA, 3' end cds
Length = 1577
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 449 actcatcaggccaaactc 466
|||| |||||||||||||
Sbjct: 341 actcttcaggccaaactc 324
>gb|U20431.1|MSU20431 Medicago sativa polygalacturonase mRNA, complete cds
Length = 1492
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 395 aggagctgttcctg 408
||||||||||||||
Sbjct: 1197 aggagctgttcctg 1184
>gb|AF383622.1|AF383622 Medicago sativa early light inducible protein mRNA, complete cds
Length = 773
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 218 ccaccatcagcacc 231
||||||||||||||
Sbjct: 272 ccaccatcagcacc 285
>gb|AF322116.2|AF322116 Medicago sativa sucrose-phosphate synthase mRNA, complete cds
Length = 3579
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 160 ggcattgatcccaa 173
||||||||||||||
Sbjct: 765 ggcattgatcccaa 752
>gb|AY219848.1| Medicago sativa polygalactorunase PG11 precursor, gene, complete cds
Length = 2213
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 395 aggagctgttcctg 408
||||||||||||||
Sbjct: 2048 aggagctgttcctg 2035
>gb|AY468362.2| Medicago sativa sucrose-phosphate synthase gene, promoter region and
complete cds
Length = 8933
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 160 ggcattgatcccaa 173
||||||||||||||
Sbjct: 3551 ggcattgatcccaa 3538
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: May 2, 2006 2:40 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1021
Number of Sequences: 7669
Number of extensions: 1021
Number of successful extensions: 233
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 204
Number of HSP's gapped (non-prelim): 29
length of query: 480
length of database: 3,745,706
effective HSP length: 15
effective length of query: 465
effective length of database: 3,630,671
effective search space: 1688262015
effective search space used: 1688262015
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)