BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBL6b07.xg.2.1
(644 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO511959.1|CO511959 s13dSG07B0300029_103818 Glandular tr... 32 0.46
gb|CO512230.1|CO512230 s13dSG03E0700051_113974 Glandular tr... 32 0.46
gb|CO514865.1|CO514865 s13dSG56C0700054_328390 Glandular tr... 32 0.46
gb|CO515207.1|CO515207 s13dSG62G0800068_399279 Glandular tr... 32 0.46
>gb|CO511959.1|CO511959 s13dSG07B0300029_103818 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 596
Score = 32.2 bits (16), Expect = 0.46
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 48 tagaaacagctgaggc 63
||||||||||||||||
Sbjct: 269 tagaaacagctgaggc 284
>gb|CO512230.1|CO512230 s13dSG03E0700051_113974 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 599
Score = 32.2 bits (16), Expect = 0.46
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 56 gctgaggcgctggcgt 71
||||||||||||||||
Sbjct: 443 gctgaggcgctggcgt 458
>gb|CO514865.1|CO514865 s13dSG56C0700054_328390 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 577
Score = 32.2 bits (16), Expect = 0.46
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 56 gctgaggcgctggcgt 71
||||||||||||||||
Sbjct: 487 gctgaggcgctggcgt 502
>gb|CO515207.1|CO515207 s13dSG62G0800068_399279 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 494
Score = 32.2 bits (16), Expect = 0.46
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 56 gctgaggcgctggcgt 71
||||||||||||||||
Sbjct: 476 gctgaggcgctggcgt 491
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 523
Number of Sequences: 7669
Number of extensions: 523
Number of successful extensions: 144
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 140
Number of HSP's gapped (non-prelim): 4
length of query: 644
length of database: 3,745,706
effective HSP length: 16
effective length of query: 628
effective length of database: 3,623,002
effective search space: 2275245256
effective search space used: 2275245256
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)