BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBL17f07.xg.2.1
(657 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO513274.1|CO513274 s13dSG37A1100081_129712 Glandular tr... 36 0.030
gb|CO516471.1|CO516471 s13dSG28C1000072_446270 Glandular tr... 34 0.12
gb|CO511836.1|CO511836 s13dSG02E1000083_103572 Glandular tr... 32 0.47
gb|CO512306.1|CO512306 s13dSG68D0700058_114126 Glandular tr... 32 0.47
gb|CO512460.1|CO512460 s13dSG100C020000_114434 Glandular tr... 32 0.47
gb|CO512524.1|CO512524 s13dSG08B0400029_120974 Glandular tr... 32 0.47
gb|CO512581.1|CO512581 s13dSG08G1100084_121088 Glandular tr... 32 0.47
gb|CO512744.1|CO512744 s13dSG88B0600045_121414 Glandular tr... 32 0.47
gb|CO512878.1|CO512878 s13dSG20G0900068_121682 Glandular tr... 32 0.47
gb|CO512958.1|CO512958 s13dSG86H0200016_121842 Glandular tr... 32 0.47
gb|CO513056.1|CO513056 s13dSG89B1100089_122038 Glandular tr... 32 0.47
gb|CO513905.1|CO513905 s13dSG71A0200005_156472 Glandular tr... 32 0.47
gb|CO514127.1|CO514127 s13dSG75E1200087_156916 Glandular tr... 32 0.47
gb|CO514438.1|CO514438 s13dSG36F1200101_327536 Glandular tr... 32 0.47
gb|CO514518.1|CO514518 s13dSG43F1000089_327696 Glandular tr... 32 0.47
gb|CO514580.1|CO514580 s13dSG42D1000090_327820 Glandular tr... 32 0.47
gb|CO514714.1|CO514714 s13dSG55C0400034_328088 Glandular tr... 32 0.47
gb|CO515391.1|CO515391 s13dSG49G0100008_417841 Glandular tr... 32 0.47
gb|CO515562.1|CO515562 s13dSG53F1000091_418183 Glandular tr... 32 0.47
gb|CO515831.1|CO515831 s13dSG54E1100085_421201 Glandular tr... 32 0.47
gb|CO516509.1|CO516509 s13dSG28H0500045_446346 Glandular tr... 32 0.47
gb|CO516625.1|CO516625 s13dSG66D0700060_446578 Glandular tr... 32 0.47
gb|CO517144.1|CO517144 s13dSG33A1000081_474372 Glandular tr... 32 0.47
gb|AF411553.1| Medicago sativa CLP protease regulatory subu... 32 0.47
emb|X97316.1|MSCDC2MSE M.sativa mRNA for cdc2 kinase homolo... 32 0.47
>gb|CO513274.1|CO513274 s13dSG37A1100081_129712 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 585
Score = 36.2 bits (18), Expect = 0.030
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 300 gctgctgctgctgctgaa 317
||||||||||||||||||
Sbjct: 78 gctgctgctgctgctgaa 95
>gb|CO516471.1|CO516471 s13dSG28C1000072_446270 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 489
Score = 34.2 bits (17), Expect = 0.12
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 300 gctgctgctgctgctga 316
|||||||||||||||||
Sbjct: 37 gctgctgctgctgctga 53
>gb|CO511836.1|CO511836 s13dSG02E1000083_103572 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 618
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 300 gctgctgctgctgctg 315
||||||||||||||||
Sbjct: 573 gctgctgctgctgctg 588
>gb|CO512306.1|CO512306 s13dSG68D0700058_114126 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 598
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 300 gctgctgctgctgctg 315
||||||||||||||||
Sbjct: 571 gctgctgctgctgctg 586
>gb|CO512460.1|CO512460 s13dSG100C020000_114434 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 587
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 300 gctgctgctgctgctg 315
||||||||||||||||
Sbjct: 572 gctgctgctgctgctg 587
>gb|CO512524.1|CO512524 s13dSG08B0400029_120974 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 598
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 300 gctgctgctgctgctg 315
||||||||||||||||
Sbjct: 573 gctgctgctgctgctg 588
>gb|CO512581.1|CO512581 s13dSG08G1100084_121088 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 627
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 300 gctgctgctgctgctg 315
||||||||||||||||
Sbjct: 573 gctgctgctgctgctg 588
>gb|CO512744.1|CO512744 s13dSG88B0600045_121414 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 587
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 300 gctgctgctgctgctg 315
||||||||||||||||
Sbjct: 81 gctgctgctgctgctg 66
>gb|CO512878.1|CO512878 s13dSG20G0900068_121682 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 586
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 300 gctgctgctgctgctg 315
||||||||||||||||
Sbjct: 571 gctgctgctgctgctg 586
>gb|CO512958.1|CO512958 s13dSG86H0200016_121842 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 530
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 300 gctgctgctgctgctg 315
||||||||||||||||
Sbjct: 31 gctgctgctgctgctg 46
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 300 gctgctgctgctgctg 315
||||||||||||||||
Sbjct: 28 gctgctgctgctgctg 43
>gb|CO513056.1|CO513056 s13dSG89B1100089_122038 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 617
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 300 gctgctgctgctgctg 315
||||||||||||||||
Sbjct: 571 gctgctgctgctgctg 586
>gb|CO513905.1|CO513905 s13dSG71A0200005_156472 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 594
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 300 gctgctgctgctgctg 315
||||||||||||||||
Sbjct: 573 gctgctgctgctgctg 588
>gb|CO514127.1|CO514127 s13dSG75E1200087_156916 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 559
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 301 ctgctgctgctgctga 316
||||||||||||||||
Sbjct: 177 ctgctgctgctgctga 192
>gb|CO514438.1|CO514438 s13dSG36F1200101_327536 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 641
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 300 gctgctgctgctgctg 315
||||||||||||||||
Sbjct: 573 gctgctgctgctgctg 588
>gb|CO514518.1|CO514518 s13dSG43F1000089_327696 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 655
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 300 gctgctgctgctgctg 315
||||||||||||||||
Sbjct: 576 gctgctgctgctgctg 591
>gb|CO514580.1|CO514580 s13dSG42D1000090_327820 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 648
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 300 gctgctgctgctgctg 315
||||||||||||||||
Sbjct: 576 gctgctgctgctgctg 591
>gb|CO514714.1|CO514714 s13dSG55C0400034_328088 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 589
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 300 gctgctgctgctgctg 315
||||||||||||||||
Sbjct: 573 gctgctgctgctgctg 588
>gb|CO515391.1|CO515391 s13dSG49G0100008_417841 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 584
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 300 gctgctgctgctgctg 315
||||||||||||||||
Sbjct: 566 gctgctgctgctgctg 581
>gb|CO515562.1|CO515562 s13dSG53F1000091_418183 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 585
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 300 gctgctgctgctgctg 315
||||||||||||||||
Sbjct: 570 gctgctgctgctgctg 585
>gb|CO515831.1|CO515831 s13dSG54E1100085_421201 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 446
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 300 gctgctgctgctgctg 315
||||||||||||||||
Sbjct: 21 gctgctgctgctgctg 36
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 300 gctgctgctgctgctg 315
||||||||||||||||
Sbjct: 18 gctgctgctgctgctg 33
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 300 gctgctgctgctgctg 315
||||||||||||||||
Sbjct: 15 gctgctgctgctgctg 30
>gb|CO516509.1|CO516509 s13dSG28H0500045_446346 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 534
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 300 gctgctgctgctgctg 315
||||||||||||||||
Sbjct: 307 gctgctgctgctgctg 322
>gb|CO516625.1|CO516625 s13dSG66D0700060_446578 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 562
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 300 gctgctgctgctgctg 315
||||||||||||||||
Sbjct: 375 gctgctgctgctgctg 390
>gb|CO517144.1|CO517144 s13dSG33A1000081_474372 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 625
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 300 gctgctgctgctgctg 315
||||||||||||||||
Sbjct: 343 gctgctgctgctgctg 328
>gb|AF411553.1| Medicago sativa CLP protease regulatory subunit CLPX mRNA, partial
cds
Length = 477
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 300 gctgctgctgctgctg 315
||||||||||||||||
Sbjct: 68 gctgctgctgctgctg 83
>emb|X97316.1|MSCDC2MSE M.sativa mRNA for cdc2 kinase homologue, cdc2MsE
Length = 1490
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 53 tcctctatcatagaga 68
||||||||||||||||
Sbjct: 1299 tcctctatcatagaga 1314
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1023
Number of Sequences: 7669
Number of extensions: 1023
Number of successful extensions: 408
Number of sequences better than 0.5: 25
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 312
Number of HSP's gapped (non-prelim): 54
length of query: 657
length of database: 3,745,706
effective HSP length: 16
effective length of query: 641
effective length of database: 3,623,002
effective search space: 2322344282
effective search space used: 2322344282
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)