BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAY3d01.yg.3.1
(808 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO512382.1|CO512382 s13dSG80C0600038_114278 Glandular tr... 32 0.58
gb|CO514513.1|CO514513 s13dSG43F0300029_327686 Glandular tr... 32 0.58
gb|CO516691.1|CO516691 s13dSG74C0100002_446710 Glandular tr... 32 0.58
gb|CO517318.1|CO517318 s13dSG45F0700063_486232 Glandular tr... 32 0.58
gb|CO511870.1|CO511870 s13dSG02H1100096_103640 Glandular tr... 30 2.3
gb|CO512800.1|CO512800 s13dSG88H0400032_121526 Glandular tr... 30 2.3
gb|CO513019.1|CO513019 s13dSG09F0800063_121964 Glandular tr... 30 2.3
gb|CO513987.1|CO513987 s13dSG72A0400021_156636 Glandular tr... 30 2.3
gb|CO514474.1|CO514474 s13dSG43B0500043_327608 Glandular tr... 30 2.3
gb|CO514650.1|CO514650 s13dSG46D0500046_327960 Glandular tr... 30 2.3
gb|L38479.1|ALFPHYT Medicago sativa phytohemagglutinin gene... 30 2.3
gb|U18296.1|MSU18296 Medicago sativa lectin (Mslec1) gene, ... 30 2.3
gb|L39960.1|ALFRPE15A Medicago sativa middle repetitive DNA... 30 2.3
gb|AI083090.1|AI083090 MS801J Medicago sativa shoot tip Lam... 28 9.0
gb|AW698437.1|AW698437 G291 glandular-haired subtracted cDN... 28 9.0
gb|AW698733.1|AW698733 r304 non-glandular-haired subtracted... 28 9.0
gb|AJ410084.1|AJ410084 AJ410084 Medicago sativa library (Ka... 28 9.0
gb|CB858112.1|CB858112 RX40 Medicago sativa cDNA-AFLP Medic... 28 9.0
gb|CO511982.1|CO511982 s13dSG07D0600058_103864 Glandular tr... 28 9.0
gb|CO512000.1|CO512000 s13dSG07E1200099_103900 Glandular tr... 28 9.0
gb|CO512428.1|CO512428 s13dSG80G0800056_114370 Glandular tr... 28 9.0
gb|CO512470.1|CO512470 s13dSG100D060004_114454 Glandular tr... 28 9.0
gb|CO512543.1|CO512543 s13dSG08D0400030_121012 Glandular tr... 28 9.0
gb|CO513049.1|CO513049 s13dSG89B0300025_122024 Glandular tr... 28 9.0
gb|CO514093.1|CO514093 s13dSG75C0100002_156848 Glandular tr... 28 9.0
gb|CO514145.1|CO514145 s13dSG75G0800056_156952 Glandular tr... 28 9.0
gb|CO515513.1|CO515513 s13dSG52E0800067_418085 Glandular tr... 28 9.0
gb|CO515842.1|CO515842 s13dSG54F1100093_421223 Glandular tr... 28 9.0
gb|CO516082.1|CO516082 s13dSG65A0600049_445492 Glandular tr... 28 9.0
gb|CO516641.1|CO516641 s13dSG66E1200099_446610 Glandular tr... 28 9.0
gb|CO516703.1|CO516703 s13dSG74D0100010_446734 Glandular tr... 28 9.0
gb|CO516962.1|CO516962 s13dSG81B0700059_468470 Glandular tr... 28 9.0
gb|CO517108.1|CO517108 s13dSG29E0800067_468762 Glandular tr... 28 9.0
emb|AX468574.1| Sequence 15 from Patent WO0238745 28 9.0
gb|AF124244.2| Medicago sativa glutamine synthetase precurs... 28 9.0
emb|AJ293274.1|MVA293274 Medicago sativa subsp. x varia mRN... 28 9.0
emb|X88845.1|MSNUM1GEN M.sativa mRNA for nuM1 protein 28 9.0
gb|DQ122778.1| Medicago sativa clone C2 cystathionine-gamma... 28 9.0
gb|DQ122797.1| Medicago sativa clone QB12 lipid transfer pr... 28 9.0
>gb|CO512382.1|CO512382 s13dSG80C0600038_114278 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 545
Score = 32.2 bits (16), Expect = 0.58
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 357 ttcaaaaagaaaatagcaaa 376
||||||| ||||||||||||
Sbjct: 202 ttcaaaaggaaaatagcaaa 183
>gb|CO514513.1|CO514513 s13dSG43F0300029_327686 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 601
Score = 32.2 bits (16), Expect = 0.58
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 588 ttgttgctgtcattga 603
||||||||||||||||
Sbjct: 523 ttgttgctgtcattga 538
>gb|CO516691.1|CO516691 s13dSG74C0100002_446710 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 463
Score = 32.2 bits (16), Expect = 0.58
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 328 ggaaaatggaagagaa 343
||||||||||||||||
Sbjct: 127 ggaaaatggaagagaa 112
>gb|CO517318.1|CO517318 s13dSG45F0700063_486232 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 592
Score = 32.2 bits (16), Expect = 0.58
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 588 ttgttgctgtcattga 603
||||||||||||||||
Sbjct: 121 ttgttgctgtcattga 106
>gb|CO511870.1|CO511870 s13dSG02H1100096_103640 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 618
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 360 aaaaagaaaatagca 374
|||||||||||||||
Sbjct: 525 aaaaagaaaatagca 511
>gb|CO512800.1|CO512800 s13dSG88H0400032_121526 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 516
Score = 30.2 bits (15), Expect = 2.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 430 taatgcagataatcttgct 448
||||||||||||| |||||
Sbjct: 105 taatgcagataatgttgct 123
>gb|CO513019.1|CO513019 s13dSG09F0800063_121964 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 579
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 160 gattcctcagcagct 174
|||||||||||||||
Sbjct: 537 gattcctcagcagct 523
>gb|CO513987.1|CO513987 s13dSG72A0400021_156636 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 562
Score = 30.2 bits (15), Expect = 2.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 430 taatgcagataatcttgct 448
||||||||||||| |||||
Sbjct: 103 taatgcagataatgttgct 121
>gb|CO514474.1|CO514474 s13dSG43B0500043_327608 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 604
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 398 ccatcttcaatattt 412
|||||||||||||||
Sbjct: 48 ccatcttcaatattt 34
>gb|CO514650.1|CO514650 s13dSG46D0500046_327960 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 533
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 751 actttctccattgaa 765
|||||||||||||||
Sbjct: 433 actttctccattgaa 419
>gb|L38479.1|ALFPHYT Medicago sativa phytohemagglutinin gene, complete cds
Length = 1716
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 328 ggaaaatggaagaga 342
|||||||||||||||
Sbjct: 1360 ggaaaatggaagaga 1374
>gb|U18296.1|MSU18296 Medicago sativa lectin (Mslec1) gene, complete cds
Length = 1716
Score = 30.2 bits (15), Expect = 2.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 328 ggaaaatggaagaga 342
|||||||||||||||
Sbjct: 1360 ggaaaatggaagaga 1374
>gb|L39960.1|ALFRPE15A Medicago sativa middle repetitive DNA (RPE15) gene, complete cds
Length = 1498
Score = 30.2 bits (15), Expect = 2.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 441 atcttgctgcttgttttga 459
|||||||||||| ||||||
Sbjct: 753 atcttgctgcttcttttga 771
>gb|AI083090.1|AI083090 MS801J Medicago sativa shoot tip Lambda ZAP cDNA library Medicago
sativa cDNA clone MS801J similar to beta-tubulin, mRNA
sequence
Length = 269
Score = 28.2 bits (14), Expect = 9.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 628 aatgcgaaaccaaa 641
||||||||||||||
Sbjct: 124 aatgcgaaaccaaa 137
>gb|AW698437.1|AW698437 G291 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 136
Score = 28.2 bits (14), Expect = 9.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 379 tcacggagatcttagaat 396
||||| ||||||||||||
Sbjct: 125 tcacgtagatcttagaat 108
>gb|AW698733.1|AW698733 r304 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 402
Score = 28.2 bits (14), Expect = 9.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 527 ctagtttatgatga 540
||||||||||||||
Sbjct: 362 ctagtttatgatga 349
>gb|AJ410084.1|AJ410084 AJ410084 Medicago sativa library (Kalo P) Medicago sativa cDNA
clone L295, mRNA sequence
Length = 629
Score = 28.2 bits (14), Expect = 9.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 443 cttgctgcttgttt 456
||||||||||||||
Sbjct: 115 cttgctgcttgttt 102
>gb|CB858112.1|CB858112 RX40 Medicago sativa cDNA-AFLP Medicago sativa cDNA, mRNA sequence
Length = 299
Score = 28.2 bits (14), Expect = 9.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 164 cctcagcagctcct 177
||||||||||||||
Sbjct: 209 cctcagcagctcct 196
>gb|CO511982.1|CO511982 s13dSG07D0600058_103864 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 528
Score = 28.2 bits (14), Expect = 9.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 582 tgaaccttgttgct 595
||||||||||||||
Sbjct: 44 tgaaccttgttgct 31
>gb|CO512000.1|CO512000 s13dSG07E1200099_103900 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 582
Score = 28.2 bits (14), Expect = 9.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 360 aaaaagaaaatagcaaat 377
||||||||||||| ||||
Sbjct: 102 aaaaagaaaataggaaat 85
>gb|CO512428.1|CO512428 s13dSG80G0800056_114370 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 533
Score = 28.2 bits (14), Expect = 9.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 582 tgaaccttgttgct 595
||||||||||||||
Sbjct: 237 tgaaccttgttgct 224
>gb|CO512470.1|CO512470 s13dSG100D060004_114454 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 595
Score = 28.2 bits (14), Expect = 9.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 751 actttctccattga 764
||||||||||||||
Sbjct: 163 actttctccattga 150
>gb|CO512543.1|CO512543 s13dSG08D0400030_121012 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 611
Score = 28.2 bits (14), Expect = 9.0
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 333 atggaagagaagttgcta 350
|||||| |||||||||||
Sbjct: 23 atggaaaagaagttgcta 40
>gb|CO513049.1|CO513049 s13dSG89B0300025_122024 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 564
Score = 28.2 bits (14), Expect = 9.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 499 caactgtgctggaa 512
||||||||||||||
Sbjct: 429 caactgtgctggaa 442
>gb|CO514093.1|CO514093 s13dSG75C0100002_156848 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 520
Score = 28.2 bits (14), Expect = 9.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 297 gtttatttgtgact 310
||||||||||||||
Sbjct: 75 gtttatttgtgact 62
>gb|CO514145.1|CO514145 s13dSG75G0800056_156952 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 453
Score = 28.2 bits (14), Expect = 9.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 334 tggaagagaagttg 347
||||||||||||||
Sbjct: 90 tggaagagaagttg 103
>gb|CO515513.1|CO515513 s13dSG52E0800067_418085 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 514
Score = 28.2 bits (14), Expect = 9.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 360 aaaaagaaaatagcaaat 377
||||||||||||| ||||
Sbjct: 110 aaaaagaaaataggaaat 93
>gb|CO515842.1|CO515842 s13dSG54F1100093_421223 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 564
Score = 28.2 bits (14), Expect = 9.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 44 ccggcgccgaaagc 57
||||||||||||||
Sbjct: 324 ccggcgccgaaagc 337
>gb|CO516082.1|CO516082 s13dSG65A0600049_445492 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 361
Score = 28.2 bits (14), Expect = 9.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 595 tgtcattgatggta 608
||||||||||||||
Sbjct: 117 tgtcattgatggta 130
>gb|CO516641.1|CO516641 s13dSG66E1200099_446610 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 295
Score = 28.2 bits (14), Expect = 9.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 651 gtgtcataataaac 664
||||||||||||||
Sbjct: 195 gtgtcataataaac 208
>gb|CO516703.1|CO516703 s13dSG74D0100010_446734 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 399
Score = 28.2 bits (14), Expect = 9.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 265 gaaagcactttgta 278
||||||||||||||
Sbjct: 351 gaaagcactttgta 338
>gb|CO516962.1|CO516962 s13dSG81B0700059_468470 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 537
Score = 28.2 bits (14), Expect = 9.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 360 aaaaagaaaatagcaaat 377
||||||||||||| ||||
Sbjct: 101 aaaaagaaaataggaaat 84
>gb|CO517108.1|CO517108 s13dSG29E0800067_468762 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 496
Score = 28.2 bits (14), Expect = 9.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 595 tgtcattgatggta 608
||||||||||||||
Sbjct: 98 tgtcattgatggta 111
>emb|AX468574.1| Sequence 15 from Patent WO0238745
Length = 1495
Score = 28.2 bits (14), Expect = 9.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 744 caagatcactttct 757
||||||||||||||
Sbjct: 1232 caagatcactttct 1245
>gb|AF124244.2| Medicago sativa glutamine synthetase precursor (gln) mRNA, nuclear
gene encoding chloroplast protein, complete cds
Length = 1595
Score = 28.2 bits (14), Expect = 9.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 578 aatgtgaaccttgt 591
||||||||||||||
Sbjct: 1098 aatgtgaaccttgt 1085
>emb|AJ293274.1|MVA293274 Medicago sativa subsp. x varia mRNA for MEK map kinase kinase (simkk
gene)
Length = 1536
Score = 28.2 bits (14), Expect = 9.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 744 caagatcactttct 757
||||||||||||||
Sbjct: 1248 caagatcactttct 1261
>emb|X88845.1|MSNUM1GEN M.sativa mRNA for nuM1 protein
Length = 2255
Score = 28.2 bits (14), Expect = 9.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 330 aaaatggaagagaagttg 347
||||||||||| ||||||
Sbjct: 2038 aaaatggaagataagttg 2021
>gb|DQ122778.1| Medicago sativa clone C2 cystathionine-gamma-synthase mRNA, partial
cds
Length = 367
Score = 28.2 bits (14), Expect = 9.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 596 gtcattgatggtac 609
||||||||||||||
Sbjct: 354 gtcattgatggtac 367
>gb|DQ122797.1| Medicago sativa clone QB12 lipid transfer protein precursor, mRNA,
partial cds
Length = 511
Score = 28.2 bits (14), Expect = 9.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 536 gatgatacatctgatgga 553
|||||| |||||||||||
Sbjct: 357 gatgatgcatctgatgga 340
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: May 2, 2006 2:40 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1708
Number of Sequences: 7669
Number of extensions: 1708
Number of successful extensions: 466
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 426
Number of HSP's gapped (non-prelim): 40
length of query: 808
length of database: 3,745,706
effective HSP length: 16
effective length of query: 792
effective length of database: 3,623,002
effective search space: 2869417584
effective search space used: 2869417584
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)