BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAJ4a11.xg.3.2
(2249 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO515635.1|CO515635 s13dSG60A0700053_419419 Glandular tr... 34 0.41
gb|CO516202.1|CO516202 s13dSG67F0500047_445732 Glandular tr... 34 0.41
gb|AY043242.1| Medicago sativa cyclin A2 (CycA2.2) gene, co... 34 0.41
>gb|CO515635.1|CO515635 s13dSG60A0700053_419419 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 543
Score = 34.2 bits (17), Expect = 0.41
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1222 acatttgtgaaaagaat 1238
|||||||||||||||||
Sbjct: 445 acatttgtgaaaagaat 461
>gb|CO516202.1|CO516202 s13dSG67F0500047_445732 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 376
Score = 34.2 bits (17), Expect = 0.41
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 218 gctcctcttcttcctct 234
|||||||||||||||||
Sbjct: 299 gctcctcttcttcctct 283
>gb|AY043242.1| Medicago sativa cyclin A2 (CycA2.2) gene, complete cds
Length = 6860
Score = 34.2 bits (17), Expect = 0.41
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 2164 gttattacttcttttca 2180
|||||||||||||||||
Sbjct: 1245 gttattacttcttttca 1229
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5031
Number of Sequences: 7669
Number of extensions: 5031
Number of successful extensions: 1330
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1325
Number of HSP's gapped (non-prelim): 5
length of query: 2249
length of database: 3,745,706
effective HSP length: 17
effective length of query: 2232
effective length of database: 3,615,333
effective search space: 8069423256
effective search space used: 8069423256
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)