BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF31c07.yg.2.1
(352 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO512688.1|CO512688 s13dSG19D1200094_121302 Glandular tr... 32 0.25
emb|AJ409165.1|MSA409165 Medicago sativa partial mRNA for Z... 30 0.97
gb|CO513117.1|CO513117 s13dSG23A1200085_129398 Glandular tr... 28 3.8
gb|CO513491.1|CO513491 s13dSG12A0600037_139764 Glandular tr... 28 3.8
gb|CO513559.1|CO513559 s13dSG12H0700060_139900 Glandular tr... 28 3.8
gb|CO514109.1|CO514109 s13dSG75D0600046_156880 Glandular tr... 28 3.8
gb|CO514585.1|CO514585 s13dSG42E0500039_327830 Glandular tr... 28 3.8
>gb|CO512688.1|CO512688 s13dSG19D1200094_121302 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 596
Score = 32.2 bits (16), Expect = 0.25
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 83 acatttctttctatta 98
||||||||||||||||
Sbjct: 240 acatttctttctatta 225
>emb|AJ409165.1|MSA409165 Medicago sativa partial mRNA for ZR4 protein
Length = 901
Score = 30.2 bits (15), Expect = 0.97
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 90 tttctattagttgaa 104
|||||||||||||||
Sbjct: 791 tttctattagttgaa 777
>gb|CO513117.1|CO513117 s13dSG23A1200085_129398 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 570
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 155 gcatttggaatgag 168
||||||||||||||
Sbjct: 426 gcatttggaatgag 413
>gb|CO513491.1|CO513491 s13dSG12A0600037_139764 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 558
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 85 atttctttctatta 98
||||||||||||||
Sbjct: 172 atttctttctatta 185
>gb|CO513559.1|CO513559 s13dSG12H0700060_139900 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 606
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 72 attggtgtttcaca 85
||||||||||||||
Sbjct: 57 attggtgtttcaca 44
>gb|CO514109.1|CO514109 s13dSG75D0600046_156880 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 497
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 72 attggtgtttcaca 85
||||||||||||||
Sbjct: 57 attggtgtttcaca 44
>gb|CO514585.1|CO514585 s13dSG42E0500039_327830 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 562
Score = 28.2 bits (14), Expect = 3.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 72 attggtgtttcaca 85
||||||||||||||
Sbjct: 55 attggtgtttcaca 42
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: May 2, 2006 2:40 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 531
Number of Sequences: 7669
Number of extensions: 531
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108
Number of HSP's gapped (non-prelim): 7
length of query: 352
length of database: 3,745,706
effective HSP length: 15
effective length of query: 337
effective length of database: 3,630,671
effective search space: 1223536127
effective search space used: 1223536127
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)