BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF11h01.xg.2.1
(328 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW698338.1|AW698338 G1 glandular-haired subtracted cDNA ... 48 4e-006
gb|AW698682.1|AW698682 R120 non-glandular-haired subtracted... 48 4e-006
gb|AW698714.1|AW698714 R91 non-glandular-haired subtracted ... 48 4e-006
gb|AW698339.1|AW698339 g122 glandular-haired subtracted cDN... 46 2e-005
gb|AW698351.1|AW698351 g32 glandular-haired subtracted cDNA... 46 2e-005
gb|AW698352.1|AW698352 g34 glandular-haired subtracted cDNA... 46 2e-005
gb|AW698893.1|AW698893 r166 non-glandular-haired subtracted... 46 2e-005
gb|AJ888503.1|AJ888503 AJ888503 Medicago sativa subsp. x va... 46 2e-005
gb|AW698342.1|AW698342 G2 glandular-haired subtracted cDNA ... 44 6e-005
gb|AW698346.1|AW698346 G75 glandular-haired subtracted cDNA... 44 6e-005
gb|AW698684.1|AW698684 R123 non-glandular-haired subtracted... 44 6e-005
gb|AW698685.1|AW698685 R125 non-glandular-haired subtracted... 44 6e-005
gb|AW698687.1|AW698687 R128 non-glandular-haired subtracted... 44 6e-005
gb|AW698701.1|AW698701 R154 non-glandular-haired subtracted... 44 6e-005
gb|AW698712.1|AW698712 R8 non-glandular-haired subtracted c... 44 6e-005
gb|AW698715.1|AW698715 R93 non-glandular-haired subtracted ... 44 6e-005
gb|AW698717.1|AW698717 R96 non-glandular-haired subtracted ... 44 6e-005
gb|AW698718.1|AW698718 R98 non-glandular-haired subtracted ... 44 6e-005
gb|AW698884.1|AW698884 r147 non-glandular-haired subtracted... 44 6e-005
gb|AW698899.1|AW698899 r7 non-glandular-haired subtracted c... 44 6e-005
gb|AJ888496.1|AJ888496 AJ888496 Medicago sativa subsp. x va... 44 6e-005
gb|AW698688.1|AW698688 R12 non-glandular-haired subtracted ... 42 2e-004
gb|AW698693.1|AW698693 R140 non-glandular-haired subtracted... 42 2e-004
gb|AW698709.1|AW698709 R84 non-glandular-haired subtracted ... 42 2e-004
gb|AW698341.1|AW698341 G143 glandular-haired subtracted cDN... 40 0.001
gb|AW698348.1|AW698348 G79 glandular-haired subtracted cDNA... 40 0.001
gb|AW698350.1|AW698350 g29 glandular-haired subtracted cDNA... 40 0.001
gb|AW698396.1|AW698396 G243 glandular-haired subtracted cDN... 40 0.001
gb|AW698672.1|AW698672 R103 non-glandular-haired subtracted... 40 0.001
gb|AW698675.1|AW698675 R10 non-glandular-haired subtracted ... 40 0.001
gb|AW698697.1|AW698697 R145 non-glandular-haired subtracted... 40 0.001
gb|AW698707.1|AW698707 R1 non-glandular-haired subtracted c... 40 0.001
gb|AW698901.1|AW698901 r97 non-glandular-haired subtracted ... 40 0.001
gb|AW698425.1|AW698425 G276 glandular-haired subtracted cDN... 38 0.004
gb|AW698680.1|AW698680 R116 non-glandular-haired subtracted... 38 0.004
gb|AW698402.1|AW698402 G249 glandular-haired subtracted cDN... 36 0.015
gb|AW698474.1|AW698474 g434 glandular-haired subtracted cDN... 36 0.015
gb|AW698549.1|AW698549 g346 glandular-haired subtracted cDN... 36 0.015
gb|AW698677.1|AW698677 R112 non-glandular-haired subtracted... 36 0.015
gb|AW698711.1|AW698711 R89 non-glandular-haired subtracted ... 36 0.015
gb|AJ888491.1|AJ888491 AJ888491 Medicago sativa subsp. x va... 36 0.015
gb|AW698532.1|AW698532 g327 glandular-haired subtracted cDN... 34 0.058
gb|AW698725.1|AW698725 r295 non-glandular-haired subtracted... 34 0.058
gb|AW698728.1|AW698728 r298 non-glandular-haired subtracted... 34 0.058
gb|AW698882.1|AW698882 r133 non-glandular-haired subtracted... 34 0.058
gb|AW698353.1|AW698353 g38 glandular-haired subtracted cDNA... 32 0.23
gb|AW698896.1|AW698896 r4 non-glandular-haired subtracted c... 32 0.23
>gb|AW698338.1|AW698338 G1 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 483
Score = 48.1 bits (24), Expect = 4e-006
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 305 tgtacctcggccgcgaccacgcta 328
||||||||||||||||||||||||
Sbjct: 452 tgtacctcggccgcgaccacgcta 475
>gb|AW698682.1|AW698682 R120 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 181
Score = 48.1 bits (24), Expect = 4e-006
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 304 ctgtacctcggccgcgaccacgct 327
||||||||||||||||||||||||
Sbjct: 158 ctgtacctcggccgcgaccacgct 181
>gb|AW698714.1|AW698714 R91 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 69
Score = 48.1 bits (24), Expect = 4e-006
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 305 tgtacctcggccgcgaccacgcta 328
||||||||||||||||||||||||
Sbjct: 24 tgtacctcggccgcgaccacgcta 1
>gb|AW698339.1|AW698339 g122 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 390
Score = 46.1 bits (23), Expect = 2e-005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 305 tgtacctcggccgcgaccacgct 327
|||||||||||||||||||||||
Sbjct: 24 tgtacctcggccgcgaccacgct 2
>gb|AW698351.1|AW698351 g32 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 327
Score = 46.1 bits (23), Expect = 2e-005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 306 gtacctcggccgcgaccacgcta 328
|||||||||||||||||||||||
Sbjct: 23 gtacctcggccgcgaccacgcta 1
>gb|AW698352.1|AW698352 g34 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 365
Score = 46.1 bits (23), Expect = 2e-005
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 306 gtacctcggccgcgaccacgcta 328
|||||||||||||||||||||||
Sbjct: 343 gtacctcggccgcgaccacgcta 365
>gb|AW698893.1|AW698893 r166 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 227
Score = 46.1 bits (23), Expect = 2e-005
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 304 ctgtacctcggccgcgaccacgc 326
|||||||||||||||||||||||
Sbjct: 205 ctgtacctcggccgcgaccacgc 227
>gb|AJ888503.1|AJ888503 AJ888503 Medicago sativa subsp. x varia 4-day-old Medicago sativa
subsp. x varia cDNA, mRNA sequence
Length = 795
Score = 46.1 bits (23), Expect = 2e-005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 306 gtacctcggccgcgaccacgcta 328
|||||||||||||||||||||||
Sbjct: 68 gtacctcggccgcgaccacgcta 46
>gb|AW698342.1|AW698342 G2 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 182
Score = 44.1 bits (22), Expect = 6e-005
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 306 gtacctcggccgcgaccacgct 327
||||||||||||||||||||||
Sbjct: 161 gtacctcggccgcgaccacgct 182
>gb|AW698346.1|AW698346 G75 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 225
Score = 44.1 bits (22), Expect = 6e-005
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 305 tgtacctcggccgcgaccacgc 326
||||||||||||||||||||||
Sbjct: 22 tgtacctcggccgcgaccacgc 1
>gb|AW698684.1|AW698684 R123 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 156
Score = 44.1 bits (22), Expect = 6e-005
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 306 gtacctcggccgcgaccacgct 327
||||||||||||||||||||||
Sbjct: 22 gtacctcggccgcgaccacgct 1
>gb|AW698685.1|AW698685 R125 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 393
Score = 44.1 bits (22), Expect = 6e-005
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 306 gtacctcggccgcgaccacgct 327
||||||||||||||||||||||
Sbjct: 22 gtacctcggccgcgaccacgct 1
>gb|AW698687.1|AW698687 R128 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 477
Score = 44.1 bits (22), Expect = 6e-005
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 306 gtacctcggccgcgaccacgct 327
||||||||||||||||||||||
Sbjct: 22 gtacctcggccgcgaccacgct 1
>gb|AW698701.1|AW698701 R154 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 366
Score = 44.1 bits (22), Expect = 6e-005
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 306 gtacctcggccgcgaccacgct 327
||||||||||||||||||||||
Sbjct: 22 gtacctcggccgcgaccacgct 1
>gb|AW698712.1|AW698712 R8 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 248
Score = 44.1 bits (22), Expect = 6e-005
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 306 gtacctcggccgcgaccacgct 327
||||||||||||||||||||||
Sbjct: 22 gtacctcggccgcgaccacgct 1
>gb|AW698715.1|AW698715 R93 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 440
Score = 44.1 bits (22), Expect = 6e-005
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 306 gtacctcggccgcgaccacgct 327
||||||||||||||||||||||
Sbjct: 419 gtacctcggccgcgaccacgct 440
>gb|AW698717.1|AW698717 R96 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 384
Score = 44.1 bits (22), Expect = 6e-005
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 306 gtacctcggccgcgaccacgct 327
||||||||||||||||||||||
Sbjct: 22 gtacctcggccgcgaccacgct 1
>gb|AW698718.1|AW698718 R98 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 330
Score = 44.1 bits (22), Expect = 6e-005
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 306 gtacctcggccgcgaccacgct 327
||||||||||||||||||||||
Sbjct: 22 gtacctcggccgcgaccacgct 1
>gb|AW698884.1|AW698884 r147 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 178
Score = 44.1 bits (22), Expect = 6e-005
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 306 gtacctcggccgcgaccacgct 327
||||||||||||||||||||||
Sbjct: 157 gtacctcggccgcgaccacgct 178
>gb|AW698899.1|AW698899 r7 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 421
Score = 44.1 bits (22), Expect = 6e-005
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 306 gtacctcggccgcgaccacgct 327
||||||||||||||||||||||
Sbjct: 22 gtacctcggccgcgaccacgct 1
>gb|AJ888496.1|AJ888496 AJ888496 Medicago sativa subsp. x varia 4-day-old Medicago sativa
subsp. x varia cDNA, mRNA sequence
Length = 470
Score = 44.1 bits (22), Expect = 6e-005
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 306 gtacctcggccgcgaccacgct 327
||||||||||||||||||||||
Sbjct: 449 gtacctcggccgcgaccacgct 470
>gb|AW698688.1|AW698688 R12 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 356
Score = 42.1 bits (21), Expect = 2e-004
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 307 tacctcggccgcgaccacgct 327
|||||||||||||||||||||
Sbjct: 336 tacctcggccgcgaccacgct 356
>gb|AW698693.1|AW698693 R140 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 380
Score = 42.1 bits (21), Expect = 2e-004
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 307 tacctcggccgcgaccacgct 327
|||||||||||||||||||||
Sbjct: 21 tacctcggccgcgaccacgct 1
>gb|AW698709.1|AW698709 R84 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 351
Score = 42.1 bits (21), Expect = 2e-004
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 307 tacctcggccgcgaccacgct 327
|||||||||||||||||||||
Sbjct: 21 tacctcggccgcgaccacgct 1
>gb|AW698341.1|AW698341 G143 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 264
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 308 acctcggccgcgaccacgct 327
||||||||||||||||||||
Sbjct: 21 acctcggccgcgaccacgct 2
>gb|AW698348.1|AW698348 G79 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 652
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 308 acctcggccgcgaccacgct 327
||||||||||||||||||||
Sbjct: 20 acctcggccgcgaccacgct 1
>gb|AW698350.1|AW698350 g29 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 274
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 307 tacctcggccgcgaccacgc 326
||||||||||||||||||||
Sbjct: 20 tacctcggccgcgaccacgc 1
>gb|AW698396.1|AW698396 G243 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 316
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 309 cctcggccgcgaccacgcta 328
||||||||||||||||||||
Sbjct: 290 cctcggccgcgaccacgcta 309
>gb|AW698672.1|AW698672 R103 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 251
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 308 acctcggccgcgaccacgct 327
||||||||||||||||||||
Sbjct: 232 acctcggccgcgaccacgct 251
>gb|AW698675.1|AW698675 R10 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 289
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 308 acctcggccgcgaccacgct 327
||||||||||||||||||||
Sbjct: 270 acctcggccgcgaccacgct 289
>gb|AW698697.1|AW698697 R145 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 354
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 308 acctcggccgcgaccacgct 327
||||||||||||||||||||
Sbjct: 335 acctcggccgcgaccacgct 354
>gb|AW698707.1|AW698707 R1 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 519
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 308 acctcggccgcgaccacgct 327
||||||||||||||||||||
Sbjct: 21 acctcggccgcgaccacgct 2
>gb|AW698901.1|AW698901 r97 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 212
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 308 acctcggccgcgaccacgct 327
||||||||||||||||||||
Sbjct: 20 acctcggccgcgaccacgct 1
>gb|AW698425.1|AW698425 G276 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 158
Score = 38.2 bits (19), Expect = 0.004
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 305 tgtacctcggccgcgaccacgct 327
||||| |||||||||||||||||
Sbjct: 23 tgtacgtcggccgcgaccacgct 1
>gb|AW698680.1|AW698680 R116 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 290
Score = 38.2 bits (19), Expect = 0.004
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 308 acctcggccgcgaccacgc 326
|||||||||||||||||||
Sbjct: 19 acctcggccgcgaccacgc 1
>gb|AW698402.1|AW698402 G249 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 316
Score = 36.2 bits (18), Expect = 0.015
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 306 gtacctcggccgcgaccacgct 327
|||| |||||||||||||||||
Sbjct: 22 gtacgtcggccgcgaccacgct 1
>gb|AW698474.1|AW698474 g434 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 311
Score = 36.2 bits (18), Expect = 0.015
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 311 tcggccgcgaccacgcta 328
||||||||||||||||||
Sbjct: 273 tcggccgcgaccacgcta 290
>gb|AW698549.1|AW698549 g346 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 192
Score = 36.2 bits (18), Expect = 0.015
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 306 gtacctcggccgcgaccacgct 327
|||| |||||||||||||||||
Sbjct: 22 gtacgtcggccgcgaccacgct 1
>gb|AW698677.1|AW698677 R112 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 234
Score = 36.2 bits (18), Expect = 0.015
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 306 gtacctcggccgcgaccacgct 327
|||||| |||||||||||||||
Sbjct: 22 gtacctaggccgcgaccacgct 1
>gb|AW698711.1|AW698711 R89 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 343
Score = 36.2 bits (18), Expect = 0.015
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 305 tgtacctcggccgcgaccacg 325
||||||||||||| |||||||
Sbjct: 23 tgtacctcggccgngaccacg 3
>gb|AJ888491.1|AJ888491 AJ888491 Medicago sativa subsp. x varia 4-day-old Medicago sativa
subsp. x varia cDNA, mRNA sequence
Length = 787
Score = 36.2 bits (18), Expect = 0.015
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 305 tgtacctcggccgcgaccacgcta 328
||| |||| |||||||||||||||
Sbjct: 510 tgtncctcngccgcgaccacgcta 533
>gb|AW698532.1|AW698532 g327 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 201
Score = 34.2 bits (17), Expect = 0.058
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 311 tcggccgcgaccacgct 327
|||||||||||||||||
Sbjct: 17 tcggccgcgaccacgct 1
>gb|AW698725.1|AW698725 r295 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 160
Score = 34.2 bits (17), Expect = 0.058
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 311 tcggccgcgaccacgct 327
|||||||||||||||||
Sbjct: 17 tcggccgcgaccacgct 1
>gb|AW698728.1|AW698728 r298 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 336
Score = 34.2 bits (17), Expect = 0.058
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 312 cggccgcgaccacgcta 328
|||||||||||||||||
Sbjct: 313 cggccgcgaccacgcta 329
>gb|AW698882.1|AW698882 r133 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 342
Score = 34.2 bits (17), Expect = 0.058
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 308 acctcggccgcgaccac 324
|||||||||||||||||
Sbjct: 323 acctcggccgcgaccac 339
>gb|AW698353.1|AW698353 g38 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 386
Score = 32.2 bits (16), Expect = 0.23
Identities = 23/24 (95%), Gaps = 1/24 (4%)
Strand = Plus / Minus
Query: 306 gtacctcgg-ccgcgaccacgcta 328
||||||||| ||||||||||||||
Sbjct: 82 gtacctcggaccgcgaccacgcta 59
>gb|AW698896.1|AW698896 r4 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 343
Score = 32.2 bits (16), Expect = 0.23
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 309 cctcggccgcgaccac 324
||||||||||||||||
Sbjct: 16 cctcggccgcgaccac 1
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 628
Number of Sequences: 7669
Number of extensions: 628
Number of successful extensions: 171
Number of sequences better than 0.5: 48
Number of HSP's better than 0.5 without gapping: 47
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 124
Number of HSP's gapped (non-prelim): 48
length of query: 328
length of database: 3,745,706
effective HSP length: 15
effective length of query: 313
effective length of database: 3,630,671
effective search space: 1136400023
effective search space used: 1136400023
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)