BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE6a06.yg.3.1
(2118 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO512159.1|CO512159 s13dSG34F0400031_108638 Glandular tr... 40 0.006
gb|CB165115.1|CB165115 46 Alfalfa developing flower bud lib... 36 0.098
gb|CO514981.1|CO514981 s13dSG63H0200028_397467 Glandular tr... 36 0.098
gb|CO511708.1|CO511708 s13dSG01B0900077_103316 Glandular tr... 34 0.39
gb|CO512147.1|CO512147 s13dSG34E0100003_108614 Glandular tr... 34 0.39
gb|CO512483.1|CO512483 s13dSG100E080005_114480 Glandular tr... 34 0.39
gb|CO512569.1|CO512569 s13dSG08F0800063_121064 Glandular tr... 34 0.39
gb|CO513006.1|CO513006 s13dSG09E0200007_121938 Glandular tr... 34 0.39
gb|CO513818.1|CO513818 s13dSG73A0400021_156298 Glandular tr... 34 0.39
gb|CO515079.1|CO515079 s13dSG97F1000091_397663 Glandular tr... 34 0.39
gb|CO515730.1|CO515730 s13dSG77B0900077_419609 Glandular tr... 34 0.39
gb|CO516346.1|CO516346 s13dSG99D0600048_446020 Glandular tr... 34 0.39
gb|AF417491.1| Medicago sativa RING-H2 protein (RH2-1) gene... 34 0.39
gb|DQ073091.1| Medicago sativa clone Agat012 SSR marker seq... 34 0.39
>gb|CO512159.1|CO512159 s13dSG34F0400031_108638 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 557
Score = 40.1 bits (20), Expect = 0.006
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1674 aagaggaggatgatgatgatgata 1697
||||||| ||||||||||||||||
Sbjct: 57 aagaggatgatgatgatgatgata 80
>gb|CB165115.1|CB165115 46 Alfalfa developing flower bud library Medicago sativa cDNA, mRNA
sequence
Length = 141
Score = 36.2 bits (18), Expect = 0.098
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 1510 tgaaaagaagaggaagctggag 1531
||||||||||||||||| ||||
Sbjct: 52 tgaaaagaagaggaagcaggag 73
>gb|CO514981.1|CO514981 s13dSG63H0200028_397467 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 489
Score = 36.2 bits (18), Expect = 0.098
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1679 gaggatgatgatgatgat 1696
||||||||||||||||||
Sbjct: 331 gaggatgatgatgatgat 348
Score = 34.2 bits (17), Expect = 0.39
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1676 gaggaggatgatgatgatgat 1696
||||| |||||||||||||||
Sbjct: 331 gaggatgatgatgatgatgat 351
>gb|CO511708.1|CO511708 s13dSG01B0900077_103316 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 179
Score = 34.2 bits (17), Expect = 0.39
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1679 gaggatgatgatgatga 1695
|||||||||||||||||
Sbjct: 81 gaggatgatgatgatga 97
>gb|CO512147.1|CO512147 s13dSG34E0100003_108614 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 592
Score = 34.2 bits (17), Expect = 0.39
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1757 aaagaaaagaaaaagga 1773
|||||||||||||||||
Sbjct: 433 aaagaaaagaaaaagga 417
>gb|CO512483.1|CO512483 s13dSG100E080005_114480 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 573
Score = 34.2 bits (17), Expect = 0.39
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1676 gaggaggatgatgatgatgat 1696
||||||||||| |||||||||
Sbjct: 482 gaggaggatgaggatgatgat 502
>gb|CO512569.1|CO512569 s13dSG08F0800063_121064 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 573
Score = 34.2 bits (17), Expect = 0.39
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1757 aaagaaaagaaaaagga 1773
|||||||||||||||||
Sbjct: 450 aaagaaaagaaaaagga 434
>gb|CO513006.1|CO513006 s13dSG09E0200007_121938 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 576
Score = 34.2 bits (17), Expect = 0.39
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1679 gaggatgatgatgatga 1695
|||||||||||||||||
Sbjct: 373 gaggatgatgatgatga 389
>gb|CO513818.1|CO513818 s13dSG73A0400021_156298 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 548
Score = 34.2 bits (17), Expect = 0.39
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1676 gaggaggatgatgatgatgat 1696
||||||||||| |||||||||
Sbjct: 474 gaggaggatgaggatgatgat 494
>gb|CO515079.1|CO515079 s13dSG97F1000091_397663 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 498
Score = 34.2 bits (17), Expect = 0.39
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1757 aaagaaaagaaaaagga 1773
|||||||||||||||||
Sbjct: 446 aaagaaaagaaaaagga 430
>gb|CO515730.1|CO515730 s13dSG77B0900077_419609 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 576
Score = 34.2 bits (17), Expect = 0.39
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1378 tgcagagacaataaaga 1394
|||||||||||||||||
Sbjct: 211 tgcagagacaataaaga 227
>gb|CO516346.1|CO516346 s13dSG99D0600048_446020 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 535
Score = 34.2 bits (17), Expect = 0.39
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1676 gaggaggatgatgatgatgat 1696
||||||||||| |||||||||
Sbjct: 483 gaggaggatgaggatgatgat 503
>gb|AF417491.1| Medicago sativa RING-H2 protein (RH2-1) gene, complete cds
Length = 3970
Score = 34.2 bits (17), Expect = 0.39
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1682 gatgatgatgatgatat 1698
|||||||||||||||||
Sbjct: 1789 gatgatgatgatgatat 1773
>gb|DQ073091.1| Medicago sativa clone Agat012 SSR marker sequence
Length = 659
Score = 34.2 bits (17), Expect = 0.39
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1010 gatgatgcagatgatgatgat 1030
||||||| |||||||||||||
Sbjct: 572 gatgatgtagatgatgatgat 592
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7679
Number of Sequences: 7669
Number of extensions: 7679
Number of successful extensions: 2813
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2760
Number of HSP's gapped (non-prelim): 47
length of query: 2118
length of database: 3,745,706
effective HSP length: 17
effective length of query: 2101
effective length of database: 3,615,333
effective search space: 7595814633
effective search space used: 7595814633
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)