BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAD15f02.sg.3.2
(2357 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ410130.1|AJ410130 AJ410130 Medicago sativa library (Ka... 40 0.007
gb|CO511759.1|CO511759 s13dSG01G0400036_103418 Glandular tr... 36 0.11
gb|CO517324.1|CO517324 s13dSG45G0500040_486244 Glandular tr... 34 0.43
emb|X13287.1|MSNOD25 Medicago sativa nodulin-25 gene 34 0.43
gb|AY348319.1| Medicago sativa, genomic sequence 34 0.43
>gb|AJ410130.1|AJ410130 AJ410130 Medicago sativa library (Kalo P) Medicago sativa cDNA clone
U53, mRNA sequence
Length = 826
Score = 40.1 bits (20), Expect = 0.007
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1388 cacatggttccacatttgtt 1407
||||||||||||||||||||
Sbjct: 161 cacatggttccacatttgtt 142
>gb|CO511759.1|CO511759 s13dSG01G0400036_103418 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 552
Score = 36.2 bits (18), Expect = 0.11
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 2257 ataaaataaaataaatta 2274
||||||||||||||||||
Sbjct: 44 ataaaataaaataaatta 61
>gb|CO517324.1|CO517324 s13dSG45G0500040_486244 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 500
Score = 34.2 bits (17), Expect = 0.43
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 2257 ataaaataaaataaatt 2273
|||||||||||||||||
Sbjct: 306 ataaaataaaataaatt 322
>emb|X13287.1|MSNOD25 Medicago sativa nodulin-25 gene
Length = 10048
Score = 34.2 bits (17), Expect = 0.43
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 2257 ataaaataaaataaatt 2273
|||||||||||||||||
Sbjct: 8612 ataaaataaaataaatt 8596
Score = 34.2 bits (17), Expect = 0.43
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 2257 ataaaataaaataaatt 2273
|||||||||||||||||
Sbjct: 8563 ataaaataaaataaatt 8547
Score = 34.2 bits (17), Expect = 0.43
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 2257 ataaaataaaataaatt 2273
|||||||||||||||||
Sbjct: 7979 ataaaataaaataaatt 7963
>gb|AY348319.1| Medicago sativa, genomic sequence
Length = 835
Score = 34.2 bits (17), Expect = 0.43
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 2258 taaaataaaataaatta 2274
|||||||||||||||||
Sbjct: 268 taaaataaaataaatta 252
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5417
Number of Sequences: 7669
Number of extensions: 5417
Number of successful extensions: 1520
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1505
Number of HSP's gapped (non-prelim): 15
length of query: 2357
length of database: 3,745,706
effective HSP length: 17
effective length of query: 2340
effective length of database: 3,615,333
effective search space: 8459879220
effective search space used: 8459879220
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)