BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= L18925.2.1
(1221 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF335473.2|AF335473 Medicago sativa MADS box protein-lik... 54 2e-007
gb|CO513274.1|CO513274 s13dSG37A1100081_129712 Glandular tr... 34 0.22
gb|CO516625.1|CO516625 s13dSG66D0700060_446578 Glandular tr... 34 0.22
>gb|AF335473.2|AF335473 Medicago sativa MADS box protein-like protein NGL9 mRNA, complete cds
Length = 801
Score = 54.0 bits (27), Expect = 2e-007
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 1066 gttctcgatcctcttgatctcaatccttcctctacccat 1104
|||||| |||||||||||||||||| ||||||| |||||
Sbjct: 39 gttctcaatcctcttgatctcaatctttcctcttcccat 1
>gb|CO513274.1|CO513274 s13dSG37A1100081_129712 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 585
Score = 34.2 bits (17), Expect = 0.22
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 521 gcagctgctgctgctgc 537
|||||||||||||||||
Sbjct: 75 gcagctgctgctgctgc 91
>gb|CO516625.1|CO516625 s13dSG66D0700060_446578 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 562
Score = 34.2 bits (17), Expect = 0.22
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 521 gcagctgctgctgctgc 537
|||||||||||||||||
Sbjct: 372 gcagctgctgctgctgc 388
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3228
Number of Sequences: 7669
Number of extensions: 3228
Number of successful extensions: 1179
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1172
Number of HSP's gapped (non-prelim): 7
length of query: 1221
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1205
effective length of database: 3,623,002
effective search space: 4365717410
effective search space used: 4365717410
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)