BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= CCR2
(1466 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DQ122836.1| Medicago sativa clone QH10 aminoimidazolecar... 32 1.1
gb|CO512561.1|CO512561 s13dSG08E1100083_121048 Glandular tr... 30 4.2
gb|CO513678.1|CO513678 s13dSG17F1100091_140138 Glandular tr... 30 4.2
gb|CO515097.1|CO515097 s13dSG40B0300029_399059 Glandular tr... 30 4.2
gb|CO516329.1|CO516329 s13dSG99B0600046_445986 Glandular tr... 30 4.2
gb|CO516671.1|CO516671 s13dSG74A0300017_446670 Glandular tr... 30 4.2
>gb|DQ122836.1| Medicago sativa clone QH10 aminoimidazolecarboximide ribonucleotide
transformylase/inosine monophosphate cyclohydrolase mRNA,
partial cds
Length = 587
Score = 32.2 bits (16), Expect = 1.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1002 ggatacaagttcacca 1017
||||||||||||||||
Sbjct: 49 ggatacaagttcacca 34
>gb|CO512561.1|CO512561 s13dSG08E1100083_121048 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 593
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 473 gatggcggcggcgga 487
|||||||||||||||
Sbjct: 221 gatggcggcggcgga 207
>gb|CO513678.1|CO513678 s13dSG17F1100091_140138 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 414
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 473 gatggcggcggcgga 487
|||||||||||||||
Sbjct: 219 gatggcggcggcgga 205
>gb|CO515097.1|CO515097 s13dSG40B0300029_399059 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 326
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 101 aaactagctagctag 115
|||||||||||||||
Sbjct: 155 aaactagctagctag 169
>gb|CO516329.1|CO516329 s13dSG99B0600046_445986 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 523
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 473 gatggcggcggcgga 487
|||||||||||||||
Sbjct: 218 gatggcggcggcgga 204
>gb|CO516671.1|CO516671 s13dSG74A0300017_446670 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 464
Score = 30.2 bits (15), Expect = 4.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 471 gtgatggcggcggcg 485
|||||||||||||||
Sbjct: 251 gtgatggcggcggcg 237
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: May 2, 2006 2:40 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2160
Number of Sequences: 7669
Number of extensions: 2160
Number of successful extensions: 382
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 374
Number of HSP's gapped (non-prelim): 8
length of query: 1466
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1450
effective length of database: 3,623,002
effective search space: 5253352900
effective search space used: 5253352900
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)