BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AB021176.2.1
(1318 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO515610.1|CO515610 s13dSG47E0600051_418279 Glandular tr... 42 0.001
gb|CO516010.1|CO516010 s13dSG61H0500048_445348 Glandular tr... 42 0.001
gb|CO512272.1|CO512272 s13dSG68A0700049_114058 Glandular tr... 34 0.24
>gb|CO515610.1|CO515610 s13dSG47E0600051_418279 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 559
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 325 aaggagaaggagaaggagaag 305
Score = 34.2 bits (17), Expect = 0.24
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 194 agaaggagaaggagaag 210
|||||||||||||||||
Sbjct: 327 agaaggagaaggagaag 311
>gb|CO516010.1|CO516010 s13dSG61H0500048_445348 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 482
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 325 aaggagaaggagaaggagaag 305
Score = 34.2 bits (17), Expect = 0.24
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 194 agaaggagaaggagaag 210
|||||||||||||||||
Sbjct: 327 agaaggagaaggagaag 311
>gb|CO512272.1|CO512272 s13dSG68A0700049_114058 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 529
Score = 34.2 bits (17), Expect = 0.24
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 194 agaaggagaaggagaag 210
|||||||||||||||||
Sbjct: 321 agaaggagaaggagaag 305
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1845
Number of Sequences: 7669
Number of extensions: 1845
Number of successful extensions: 349
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 338
Number of HSP's gapped (non-prelim): 9
length of query: 1318
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1302
effective length of database: 3,623,002
effective search space: 4717148604
effective search space used: 4717148604
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)