BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 9196052.2.1
(771 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO512808.1|CO512808 s13dSG20A0200005_121542 Glandular tr... 32 0.55
gb|CO512544.1|CO512544 s13dSG08D0500042_121014 Glandular tr... 30 2.2
gb|CO515192.1|CO515192 s13dSG62E0400035_399249 Glandular tr... 30 2.2
gb|AW698698.1|AW698698 R146 non-glandular-haired subtracted... 28 8.6
gb|CO511800.1|CO511800 s13dSG02B1000089_103500 Glandular tr... 28 8.6
gb|CO513423.1|CO513423 s13dSG38H1000080_130010 Glandular tr... 28 8.6
gb|CO513458.1|CO513458 s13dSG10D1100090_130080 Glandular tr... 28 8.6
gb|CO513582.1|CO513582 s13dSG16B1100089_139946 Glandular tr... 28 8.6
gb|CO513938.1|CO513938 s13dSG71D0800062_156538 Glandular tr... 28 8.6
gb|CO514841.1|CO514841 s13dSG59H1100096_328342 Glandular tr... 28 8.6
gb|CO514882.1|CO514882 s13dSG56E0300023_328424 Glandular tr... 28 8.6
gb|CO514962.1|CO514962 s13dSG63E1000083_397429 Glandular tr... 28 8.6
gb|CO515424.1|CO515424 s13dSG50D1000090_417907 Glandular tr... 28 8.6
gb|CO515723.1|CO515723 s13dSG77B0200025_419595 Glandular tr... 28 8.6
gb|CO516241.1|CO516241 s13dSG69B0400029_445810 Glandular tr... 28 8.6
gb|CO516292.1|CO516292 s13dSG69F0800073_445912 Glandular tr... 28 8.6
gb|CO516359.1|CO516359 s13dSG99E1100085_446046 Glandular tr... 28 8.6
gb|CO516617.1|CO516617 s13dSG66C1000072_446562 Glandular tr... 28 8.6
gb|U28148.1|MSU28148 Medicago sativa putative pectinesteras... 28 8.6
emb|X88864.1|MSCYCPROT M.sativa mRNA for cyclin protein 28 8.6
emb|AJ132930.1|MSA132930 Medicago sativa cycD3 gene. type I... 28 8.6
emb|X80788.1|MVPP1MS M.varia mRNA for pp1Ms protein 28 8.6
gb|DQ122816.1| Medicago sativa clone P15 mRNA sequence 28 8.6
>gb|CO512808.1|CO512808 s13dSG20A0200005_121542 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 508
Score = 32.2 bits (16), Expect = 0.55
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 215 tggaagagagagagaa 230
||||||||||||||||
Sbjct: 181 tggaagagagagagaa 166
>gb|CO512544.1|CO512544 s13dSG08D0500042_121014 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 226
Score = 30.2 bits (15), Expect = 2.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 655 gccgccacggcggcg 669
|||||||||||||||
Sbjct: 198 gccgccacggcggcg 212
>gb|CO515192.1|CO515192 s13dSG62E0400035_399249 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 489
Score = 30.2 bits (15), Expect = 2.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 232 ccgtacttaggctag 246
|||||||||||||||
Sbjct: 443 ccgtacttaggctag 429
>gb|AW698698.1|AW698698 R146 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 326
Score = 28.2 bits (14), Expect = 8.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 159 aaatggaaaaggag 172
||||||||||||||
Sbjct: 210 aaatggaaaaggag 197
>gb|CO511800.1|CO511800 s13dSG02B1000089_103500 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 623
Score = 28.2 bits (14), Expect = 8.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 218 aagagagagagaaa 231
||||||||||||||
Sbjct: 175 aagagagagagaaa 162
>gb|CO513423.1|CO513423 s13dSG38H1000080_130010 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 537
Score = 28.2 bits (14), Expect = 8.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 632 agcttcgtcgtcga 645
||||||||||||||
Sbjct: 85 agcttcgtcgtcga 98
>gb|CO513458.1|CO513458 s13dSG10D1100090_130080 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 578
Score = 28.2 bits (14), Expect = 8.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 216 ggaagagagagaga 229
||||||||||||||
Sbjct: 48 ggaagagagagaga 35
>gb|CO513582.1|CO513582 s13dSG16B1100089_139946 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 544
Score = 28.2 bits (14), Expect = 8.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 634 cttcgtcgtcgacg 647
||||||||||||||
Sbjct: 256 cttcgtcgtcgacg 269
>gb|CO513938.1|CO513938 s13dSG71D0800062_156538 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 552
Score = 28.2 bits (14), Expect = 8.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 216 ggaagagagagaga 229
||||||||||||||
Sbjct: 45 ggaagagagagaga 32
>gb|CO514841.1|CO514841 s13dSG59H1100096_328342 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 392
Score = 28.2 bits (14), Expect = 8.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 292 caattaataaacca 305
||||||||||||||
Sbjct: 318 caattaataaacca 305
>gb|CO514882.1|CO514882 s13dSG56E0300023_328424 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 582
Score = 28.2 bits (14), Expect = 8.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 152 tacaaacaaatgga 165
||||||||||||||
Sbjct: 488 tacaaacaaatgga 475
>gb|CO514962.1|CO514962 s13dSG63E1000083_397429 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 371
Score = 28.2 bits (14), Expect = 8.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 216 ggaagagagagaga 229
||||||||||||||
Sbjct: 327 ggaagagagagaga 340
>gb|CO515424.1|CO515424 s13dSG50D1000090_417907 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 419
Score = 28.2 bits (14), Expect = 8.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 216 ggaagagagagaga 229
||||||||||||||
Sbjct: 3 ggaagagagagaga 16
>gb|CO515723.1|CO515723 s13dSG77B0200025_419595 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 555
Score = 28.2 bits (14), Expect = 8.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 556 gaggtccgacaggc 569
||||||||||||||
Sbjct: 347 gaggtccgacaggc 360
>gb|CO516241.1|CO516241 s13dSG69B0400029_445810 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 211
Score = 28.2 bits (14), Expect = 8.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 443 atgctgcatatatg 456
||||||||||||||
Sbjct: 116 atgctgcatatatg 129
>gb|CO516292.1|CO516292 s13dSG69F0800073_445912 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 509
Score = 28.2 bits (14), Expect = 8.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 216 ggaagagagagaga 229
||||||||||||||
Sbjct: 42 ggaagagagagaga 29
>gb|CO516359.1|CO516359 s13dSG99E1100085_446046 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 474
Score = 28.2 bits (14), Expect = 8.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 218 aagagagagagaaa 231
||||||||||||||
Sbjct: 110 aagagagagagaaa 97
>gb|CO516617.1|CO516617 s13dSG66C1000072_446562 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 562
Score = 28.2 bits (14), Expect = 8.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 6 tagtacaagttgac 19
||||||||||||||
Sbjct: 323 tagtacaagttgac 336
>gb|U28148.1|MSU28148 Medicago sativa putative pectinesterase mRNA, complete cds
Length = 1573
Score = 28.2 bits (14), Expect = 8.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 329 atattcagctgcta 342
||||||||||||||
Sbjct: 1329 atattcagctgcta 1316
>emb|X88864.1|MSCYCPROT M.sativa mRNA for cyclin protein
Length = 1861
Score = 28.2 bits (14), Expect = 8.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 217 gaagagagagagaa 230
||||||||||||||
Sbjct: 100 gaagagagagagaa 87
>emb|AJ132930.1|MSA132930 Medicago sativa cycD3 gene. type II promoter and exons 1-2
Length = 3054
Score = 28.2 bits (14), Expect = 8.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 216 ggaagagagagaga 229
||||||||||||||
Sbjct: 2171 ggaagagagagaga 2158
>emb|X80788.1|MVPP1MS M.varia mRNA for pp1Ms protein
Length = 1510
Score = 28.2 bits (14), Expect = 8.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 218 aagagagagagaaa 231
||||||||||||||
Sbjct: 163 aagagagagagaaa 150
>gb|DQ122816.1| Medicago sativa clone P15 mRNA sequence
Length = 457
Score = 28.2 bits (14), Expect = 8.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 636 tcgtcgtcgacgcc 649
||||||||||||||
Sbjct: 23 tcgtcgtcgacgcc 10
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: May 2, 2006 2:40 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2069
Number of Sequences: 7669
Number of extensions: 2069
Number of successful extensions: 750
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 723
Number of HSP's gapped (non-prelim): 27
length of query: 771
length of database: 3,745,706
effective HSP length: 16
effective length of query: 755
effective length of database: 3,623,002
effective search space: 2735366510
effective search space used: 2735366510
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)