BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8011540.2.1
(1916 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO512485.1|CO512485 s13dSG100E110008_114484 Glandular tr... 40 0.006
gb|CO512343.1|CO512343 s13dSG68H0100012_114200 Glandular tr... 36 0.088
gb|CO511971.1|CO511971 s13dSG07C0600050_103842 Glandular tr... 34 0.35
gb|CO513651.1|CO513651 s13dSG17C0800054_140084 Glandular tr... 34 0.35
gb|CO516590.1|CO516590 s13dSG66A0300017_446508 Glandular tr... 34 0.35
>gb|CO512485.1|CO512485 s13dSG100E110008_114484 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 574
Score = 40.1 bits (20), Expect = 0.006
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1158 aggtggttttggaaaagtgtacaaggga 1185
|||||||||||| ||||| |||||||||
Sbjct: 546 aggtggttttggtaaagtctacaaggga 573
>gb|CO512343.1|CO512343 s13dSG68H0100012_114200 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 406
Score = 36.2 bits (18), Expect = 0.088
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 1796 aaggactgctgaaggagaaaaaggtggaga 1825
|||||||||||| ||||| ||||||||||
Sbjct: 75 aaggactgctgatggagatgaaggtggaga 104
>gb|CO511971.1|CO511971 s13dSG07C0600050_103842 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 514
Score = 34.2 bits (17), Expect = 0.35
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1535 ttttggatgaggagttt 1551
|||||||||||||||||
Sbjct: 101 ttttggatgaggagttt 85
>gb|CO513651.1|CO513651 s13dSG17C0800054_140084 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 423
Score = 34.2 bits (17), Expect = 0.35
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1535 ttttggatgaggagttt 1551
|||||||||||||||||
Sbjct: 106 ttttggatgaggagttt 90
>gb|CO516590.1|CO516590 s13dSG66A0300017_446508 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 370
Score = 34.2 bits (17), Expect = 0.35
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1763 atgatgatgatgttatg 1779
|||||||||||||||||
Sbjct: 251 atgatgatgatgttatg 267
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4811
Number of Sequences: 7669
Number of extensions: 4811
Number of successful extensions: 1631
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1624
Number of HSP's gapped (non-prelim): 7
length of query: 1916
length of database: 3,745,706
effective HSP length: 17
effective length of query: 1899
effective length of database: 3,615,333
effective search space: 6865517367
effective search space used: 6865517367
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)