BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 6293482.2.1
(2042 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO514325.1|CO514325 s13dSG84B0600045_157312 Glandular tr... 38 0.024
gb|CO517117.1|CO517117 s13dSG29F0700063_468780 Glandular tr... 36 0.094
gb|CO512159.1|CO512159 s13dSG34F0400031_108638 Glandular tr... 34 0.37
gb|CO514212.1|CO514212 s13dSG70G0400024_157086 Glandular tr... 34 0.37
gb|CO514231.1|CO514231 s13dSG76A1100081_157124 Glandular tr... 34 0.37
gb|CO514588.1|CO514588 s13dSG42E0800067_327836 Glandular tr... 34 0.37
gb|CO515174.1|CO515174 s13dSG62C0600050_399213 Glandular tr... 34 0.37
gb|CO515321.1|CO515321 s13dSG48E1100087_417701 Glandular tr... 34 0.37
gb|AF417491.1| Medicago sativa RING-H2 protein (RH2-1) gene... 34 0.37
gb|AY468362.2| Medicago sativa sucrose-phosphate synthase g... 34 0.37
gb|DQ073089.1| Medicago sativa clone Agat009 SSR marker seq... 34 0.37
gb|DQ073090.1| Medicago sativa clone Agat010 SSR marker seq... 34 0.37
gb|AY912107.1| Medicago satvia SSR marker Agat004 sequence 34 0.37
gb|AY912108.1| Medicago satvia SSR marker Agat005 sequence 34 0.37
>gb|CO514325.1|CO514325 s13dSG84B0600045_157312 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 491
Score = 38.2 bits (19), Expect = 0.024
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1746 gacgccgacgccgacgctg 1764
|||||||||||||||||||
Sbjct: 143 gacgccgacgccgacgctg 161
Score = 34.2 bits (17), Expect = 0.37
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1742 cgccgacgccgacgccgacgc 1762
||||||||||||||| |||||
Sbjct: 145 cgccgacgccgacgctgacgc 165
>gb|CO517117.1|CO517117 s13dSG29F0700063_468780 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 492
Score = 36.2 bits (18), Expect = 0.094
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1201 tggagaacttgccggaga 1218
||||||||||||||||||
Sbjct: 172 tggagaacttgccggaga 155
>gb|CO512159.1|CO512159 s13dSG34F0400031_108638 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 557
Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 258 tatcatcatcatcatca 274
|||||||||||||||||
Sbjct: 80 tatcatcatcatcatca 64
>gb|CO514212.1|CO514212 s13dSG70G0400024_157086 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 320
Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 259 atcatcatcatcatcac 275
|||||||||||||||||
Sbjct: 165 atcatcatcatcatcac 181
>gb|CO514231.1|CO514231 s13dSG76A1100081_157124 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 445
Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 259 atcatcatcatcatcac 275
|||||||||||||||||
Sbjct: 170 atcatcatcatcatcac 186
>gb|CO514588.1|CO514588 s13dSG42E0800067_327836 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 637
Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 259 atcatcatcatcatcac 275
|||||||||||||||||
Sbjct: 31 atcatcatcatcatcac 47
>gb|CO515174.1|CO515174 s13dSG62C0600050_399213 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 495
Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 259 atcatcatcatcatcac 275
|||||||||||||||||
Sbjct: 417 atcatcatcatcatcac 433
>gb|CO515321.1|CO515321 s13dSG48E1100087_417701 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 532
Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 259 atcatcatcatcatcac 275
|||||||||||||||||
Sbjct: 170 atcatcatcatcatcac 186
>gb|AF417491.1| Medicago sativa RING-H2 protein (RH2-1) gene, complete cds
Length = 3970
Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 258 tatcatcatcatcatca 274
|||||||||||||||||
Sbjct: 1774 tatcatcatcatcatca 1790
>gb|AY468362.2| Medicago sativa sucrose-phosphate synthase gene, promoter region and
complete cds
Length = 8933
Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 259 atcatcatcatcatcac 275
|||||||||||||||||
Sbjct: 2833 atcatcatcatcatcac 2817
>gb|DQ073089.1| Medicago sativa clone Agat009 SSR marker sequence
Length = 669
Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 258 tatcatcatcatcatca 274
|||||||||||||||||
Sbjct: 554 tatcatcatcatcatca 570
>gb|DQ073090.1| Medicago sativa clone Agat010 SSR marker sequence
Length = 604
Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 259 atcatcatcatcatcac 275
|||||||||||||||||
Sbjct: 355 atcatcatcatcatcac 339
>gb|AY912107.1| Medicago satvia SSR marker Agat004 sequence
Length = 594
Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 258 tatcatcatcatcatca 274
|||||||||||||||||
Sbjct: 334 tatcatcatcatcatca 350
>gb|AY912108.1| Medicago satvia SSR marker Agat005 sequence
Length = 418
Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 259 atcatcatcatcatcac 275
|||||||||||||||||
Sbjct: 67 atcatcatcatcatcac 51
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3102
Number of Sequences: 7669
Number of extensions: 3102
Number of successful extensions: 1064
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1007
Number of HSP's gapped (non-prelim): 40
length of query: 2042
length of database: 3,745,706
effective HSP length: 17
effective length of query: 2025
effective length of database: 3,615,333
effective search space: 7321049325
effective search space used: 7321049325
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)