BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5735869.2.1
(539 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO514394.1|CO514394 s13dSG36A1000071_327448 Glandular tr... 32 0.38
gb|CO514994.1|CO514994 s13dSG26A1000081_397493 Glandular tr... 32 0.38
gb|CO516037.1|CO516037 s13dSG64C0500036_445402 Glandular tr... 32 0.38
gb|AF014375.1|AF014375 Medicago sativa putative JUN kinase ... 32 0.38
>gb|CO514394.1|CO514394 s13dSG36A1000071_327448 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 558
Score = 32.2 bits (16), Expect = 0.38
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 514 aagaagaagaattgaa 529
||||||||||||||||
Sbjct: 139 aagaagaagaattgaa 154
>gb|CO514994.1|CO514994 s13dSG26A1000081_397493 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 462
Score = 32.2 bits (16), Expect = 0.38
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 514 aagaagaagaattgaa 529
||||||||||||||||
Sbjct: 139 aagaagaagaattgaa 154
>gb|CO516037.1|CO516037 s13dSG64C0500036_445402 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 311
Score = 32.2 bits (16), Expect = 0.38
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 505 tcatcaaataagaagaagaa 524
|||||||| |||||||||||
Sbjct: 111 tcatcaaagaagaagaagaa 130
>gb|AF014375.1|AF014375 Medicago sativa putative JUN kinase activation domain binding
protein mRNA, complete cds
Length = 1321
Score = 32.2 bits (16), Expect = 0.38
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 52 tttgttccacagaaga 67
||||||||||||||||
Sbjct: 792 tttgttccacagaaga 777
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1636
Number of Sequences: 7669
Number of extensions: 1636
Number of successful extensions: 550
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 545
Number of HSP's gapped (non-prelim): 5
length of query: 539
length of database: 3,745,706
effective HSP length: 16
effective length of query: 523
effective length of database: 3,623,002
effective search space: 1894830046
effective search space used: 1894830046
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)