BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5705280.3.1
(980 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO512814.1|CO512814 s13dSG20A0800053_121554 Glandular tr... 32 0.70
gb|CO517049.1|CO517049 s13dSG31F0700061_468644 Glandular tr... 32 0.70
gb|AW698603.1|AW698603 g566 glandular-haired subtracted cDN... 30 2.8
gb|AW698676.1|AW698676 R110 non-glandular-haired subtracted... 30 2.8
gb|CB165134.1|CB165134 65 Alfalfa developing flower bud lib... 30 2.8
gb|CO511700.1|CO511700 s13dSG01B0100013_103300 Glandular tr... 30 2.8
gb|CO511963.1|CO511963 s13dSG07B0900077_103826 Glandular tr... 30 2.8
gb|CO512122.1|CO512122 s13dSG34B0600045_108564 Glandular tr... 30 2.8
gb|CO512734.1|CO512734 s13dSG88A0500033_121394 Glandular tr... 30 2.8
gb|CO512786.1|CO512786 s13dSG88F1000079_121498 Glandular tr... 30 2.8
gb|CO512793.1|CO512793 s13dSG88G0800056_121512 Glandular tr... 30 2.8
gb|CO513842.1|CO513842 s13dSG73C0500034_156346 Glandular tr... 30 2.8
gb|CO514591.1|CO514591 s13dSG42E1200099_327842 Glandular tr... 30 2.8
gb|CO514898.1|CO514898 s13dSG56G0100008_328456 Glandular tr... 30 2.8
gb|CO515489.1|CO515489 s13dSG52B1200101_418037 Glandular tr... 30 2.8
gb|CO515811.1|CO515811 s13dSG54C1100084_421161 Glandular tr... 30 2.8
gb|CO515948.1|CO515948 s13dSG61B0700061_445224 Glandular tr... 30 2.8
gb|CO516639.1|CO516639 s13dSG66E1000081_446606 Glandular tr... 30 2.8
gb|CO516926.1|CO516926 s13dSG58E0900069_468398 Glandular tr... 30 2.8
emb|AJ306690.1|MSA306690 Medicago sativa prx2 gene for pero... 30 2.8
gb|DQ122771.1| Medicago sativa clone ME7 hydroxyproline-ric... 30 2.8
>gb|CO512814.1|CO512814 s13dSG20A0800053_121554 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 602
Score = 32.2 bits (16), Expect = 0.70
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 38 ttaaagttgtgtgtgg 53
||||||||||||||||
Sbjct: 548 ttaaagttgtgtgtgg 533
>gb|CO517049.1|CO517049 s13dSG31F0700061_468644 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 536
Score = 32.2 bits (16), Expect = 0.70
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 736 aatgaatgcatcacca 751
||||||||||||||||
Sbjct: 328 aatgaatgcatcacca 313
>gb|AW698603.1|AW698603 g566 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 230
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 907 cttctcctcatcctt 921
|||||||||||||||
Sbjct: 189 cttctcctcatcctt 203
>gb|AW698676.1|AW698676 R110 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 565
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 503 cagctcttgatctga 517
|||||||||||||||
Sbjct: 53 cagctcttgatctga 39
>gb|CB165134.1|CB165134 65 Alfalfa developing flower bud library Medicago sativa cDNA, mRNA
sequence
Length = 121
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 959 ttgcaaagacaaggc 973
|||||||||||||||
Sbjct: 71 ttgcaaagacaaggc 85
>gb|CO511700.1|CO511700 s13dSG01B0100013_103300 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 423
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 907 cttctcctcatcctt 921
|||||||||||||||
Sbjct: 204 cttctcctcatcctt 190
>gb|CO511963.1|CO511963 s13dSG07B0900077_103826 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 497
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 907 cttctcctcatcctt 921
|||||||||||||||
Sbjct: 213 cttctcctcatcctt 199
>gb|CO512122.1|CO512122 s13dSG34B0600045_108564 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 594
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 503 cagctcttgatctga 517
|||||||||||||||
Sbjct: 111 cagctcttgatctga 125
>gb|CO512734.1|CO512734 s13dSG88A0500033_121394 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 594
Score = 30.2 bits (15), Expect = 2.8
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 325 aataacatcatcgacggct 343
||||||| |||||||||||
Sbjct: 310 aataacaccatcgacggct 292
>gb|CO512786.1|CO512786 s13dSG88F1000079_121498 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 491
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 907 cttctcctcatcctt 921
|||||||||||||||
Sbjct: 198 cttctcctcatcctt 184
>gb|CO512793.1|CO512793 s13dSG88G0800056_121512 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 540
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 245 tgggttgtaacgtgg 259
|||||||||||||||
Sbjct: 78 tgggttgtaacgtgg 92
>gb|CO513842.1|CO513842 s13dSG73C0500034_156346 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 606
Score = 30.2 bits (15), Expect = 2.8
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 325 aataacatcatcgacggct 343
||||||| |||||||||||
Sbjct: 315 aataacaccatcgacggct 297
>gb|CO514591.1|CO514591 s13dSG42E1200099_327842 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 583
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 260 tggccatgcttttga 274
|||||||||||||||
Sbjct: 555 tggccatgcttttga 569
>gb|CO514898.1|CO514898 s13dSG56G0100008_328456 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 612
Score = 30.2 bits (15), Expect = 2.8
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 325 aataacatcatcgacggct 343
||||||| |||||||||||
Sbjct: 316 aataacaccatcgacggct 298
>gb|CO515489.1|CO515489 s13dSG52B1200101_418037 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 527
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 907 cttctcctcatcctt 921
|||||||||||||||
Sbjct: 207 cttctcctcatcctt 193
>gb|CO515811.1|CO515811 s13dSG54C1100084_421161 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 493
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 907 cttctcctcatcctt 921
|||||||||||||||
Sbjct: 207 cttctcctcatcctt 193
>gb|CO515948.1|CO515948 s13dSG61B0700061_445224 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 446
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 907 cttctcctcatcctt 921
|||||||||||||||
Sbjct: 208 cttctcctcatcctt 194
>gb|CO516639.1|CO516639 s13dSG66E1000081_446606 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 266
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 907 cttctcctcatcctt 921
|||||||||||||||
Sbjct: 207 cttctcctcatcctt 193
>gb|CO516926.1|CO516926 s13dSG58E0900069_468398 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 454
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 907 cttctcctcatcctt 921
|||||||||||||||
Sbjct: 205 cttctcctcatcctt 191
>emb|AJ306690.1|MSA306690 Medicago sativa prx2 gene for peroxidase2, exons 1-4
Length = 5090
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 412 agtaatattaatata 426
|||||||||||||||
Sbjct: 2308 agtaatattaatata 2294
>gb|DQ122771.1| Medicago sativa clone ME7 hydroxyproline-rich glycoprotein-like
protein mRNA, partial cds
Length = 553
Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 205 gtcttcacattctca 219
|||||||||||||||
Sbjct: 319 gtcttcacattctca 305
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: May 2, 2006 2:40 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2376
Number of Sequences: 7669
Number of extensions: 2376
Number of successful extensions: 510
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 486
Number of HSP's gapped (non-prelim): 24
length of query: 980
length of database: 3,745,706
effective HSP length: 16
effective length of query: 964
effective length of database: 3,623,002
effective search space: 3492573928
effective search space used: 3492573928
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)