BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5704661.2.1
(798 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW698347.1|AW698347 G78 glandular-haired subtracted cDNA... 52 6e-007
gb|AW698716.1|AW698716 R95 non-glandular-haired subtracted ... 52 6e-007
gb|AW698345.1|AW698345 G73 glandular-haired subtracted cDNA... 50 2e-006
gb|AW698351.1|AW698351 g32 glandular-haired subtracted cDNA... 50 2e-006
gb|AW698672.1|AW698672 R103 non-glandular-haired subtracted... 50 2e-006
gb|AW698341.1|AW698341 G143 glandular-haired subtracted cDN... 48 1e-005
gb|AW698350.1|AW698350 g29 glandular-haired subtracted cDNA... 48 1e-005
gb|AW698675.1|AW698675 R10 non-glandular-haired subtracted ... 48 1e-005
gb|AW698681.1|AW698681 R11 non-glandular-haired subtracted ... 48 1e-005
gb|AW698683.1|AW698683 R121 non-glandular-haired subtracted... 48 1e-005
gb|AW698685.1|AW698685 R125 non-glandular-haired subtracted... 48 1e-005
gb|AW698715.1|AW698715 R93 non-glandular-haired subtracted ... 48 1e-005
gb|AW698901.1|AW698901 r97 non-glandular-haired subtracted ... 48 1e-005
gb|AW698352.1|AW698352 g34 glandular-haired subtracted cDNA... 46 4e-005
gb|AW698688.1|AW698688 R12 non-glandular-haired subtracted ... 46 4e-005
gb|AW698698.1|AW698698 R146 non-glandular-haired subtracted... 46 4e-005
gb|AW698678.1|AW698678 R113 non-glandular-haired subtracted... 44 1e-004
gb|AW698679.1|AW698679 R115 non-glandular-haired subtracted... 44 1e-004
gb|AW698717.1|AW698717 R96 non-glandular-haired subtracted ... 44 1e-004
gb|AW698718.1|AW698718 R98 non-glandular-haired subtracted ... 44 1e-004
gb|AW698777.1|AW698777 r361 non-glandular-haired subtracted... 44 1e-004
gb|AW698886.1|AW698886 r151 non-glandular-haired subtracted... 44 1e-004
gb|AW698895.1|AW698895 r3 non-glandular-haired subtracted c... 44 1e-004
gb|AW698338.1|AW698338 G1 glandular-haired subtracted cDNA ... 42 6e-004
gb|AW698354.1|AW698354 g40 glandular-haired subtracted cDNA... 42 6e-004
gb|AW698402.1|AW698402 G249 glandular-haired subtracted cDN... 42 6e-004
gb|AW698697.1|AW698697 R145 non-glandular-haired subtracted... 42 6e-004
gb|DQ122784.1| Medicago sativa clone C43 putative splicing ... 42 6e-004
gb|AW698711.1|AW698711 R89 non-glandular-haired subtracted ... 40 0.002
gb|AJ888497.1|AJ888497 AJ888497 Medicago sativa subsp. x va... 40 0.002
gb|AJ888498.1|AJ888498 AJ888498 Medicago sativa subsp. x va... 40 0.002
gb|AW698526.1|AW698526 g320 glandular-haired subtracted cDN... 38 0.009
gb|AW698680.1|AW698680 R116 non-glandular-haired subtracted... 38 0.009
gb|AW698699.1|AW698699 R149 non-glandular-haired subtracted... 38 0.009
gb|AW698682.1|AW698682 R120 non-glandular-haired subtracted... 36 0.037
gb|AW698346.1|AW698346 G75 glandular-haired subtracted cDNA... 34 0.14
gb|AW698490.1|AW698490 g454 glandular-haired subtracted cDN... 34 0.14
gb|AW698492.1|AW698492 g456 glandular-haired subtracted cDN... 34 0.14
gb|AW698731.1|AW698731 r302 non-glandular-haired subtracted... 34 0.14
gb|AW698884.1|AW698884 r147 non-glandular-haired subtracted... 34 0.14
gb|AW698887.1|AW698887 r152 non-glandular-haired subtracted... 34 0.14
>gb|AW698347.1|AW698347 G78 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 553
Score = 52.0 bits (26), Expect = 6e-007
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 773 ggtacctgcccgggcggccgctcgaa 798
||||||||||||||||||||||||||
Sbjct: 113 ggtacctgcccgggcggccgctcgaa 88
>gb|AW698716.1|AW698716 R95 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 434
Score = 52.0 bits (26), Expect = 6e-007
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 771 caggtacctgcccgggcggccgctcg 796
||||||||||||||||||||||||||
Sbjct: 26 caggtacctgcccgggcggccgctcg 1
>gb|AW698345.1|AW698345 G73 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 407
Score = 50.1 bits (25), Expect = 2e-006
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 773 ggtacctgcccgggcggccgctcga 797
|||||||||||||||||||||||||
Sbjct: 25 ggtacctgcccgggcggccgctcga 1
>gb|AW698351.1|AW698351 g32 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 327
Score = 50.1 bits (25), Expect = 2e-006
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||||
Sbjct: 291 gtacctgcccgggcggccgctcgaa 315
>gb|AW698672.1|AW698672 R103 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 251
Score = 50.1 bits (25), Expect = 2e-006
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 773 ggtacctgcccgggcggccgctcga 797
|||||||||||||||||||||||||
Sbjct: 25 ggtacctgcccgggcggccgctcga 1
>gb|AW698341.1|AW698341 G143 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 264
Score = 48.1 bits (24), Expect = 1e-005
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcga 797
||||||||||||||||||||||||
Sbjct: 241 gtacctgcccgggcggccgctcga 264
>gb|AW698350.1|AW698350 g29 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 274
Score = 48.1 bits (24), Expect = 1e-005
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcga 797
||||||||||||||||||||||||
Sbjct: 251 gtacctgcccgggcggccgctcga 274
>gb|AW698675.1|AW698675 R10 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 289
Score = 48.1 bits (24), Expect = 1e-005
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 774 gtacctgcccgggcggccgctcga 797
||||||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgctcga 1
>gb|AW698681.1|AW698681 R11 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 168
Score = 48.1 bits (24), Expect = 1e-005
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 774 gtacctgcccgggcggccgctcga 797
||||||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgctcga 1
>gb|AW698683.1|AW698683 R121 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 527
Score = 48.1 bits (24), Expect = 1e-005
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 774 gtacctgcccgggcggccgctcga 797
||||||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgctcga 1
>gb|AW698685.1|AW698685 R125 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 393
Score = 48.1 bits (24), Expect = 1e-005
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcga 797
||||||||||||||||||||||||
Sbjct: 370 gtacctgcccgggcggccgctcga 393
>gb|AW698715.1|AW698715 R93 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 440
Score = 48.1 bits (24), Expect = 1e-005
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 774 gtacctgcccgggcggccgctcga 797
||||||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgctcga 1
>gb|AW698901.1|AW698901 r97 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 212
Score = 48.1 bits (24), Expect = 1e-005
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcga 797
||||||||||||||||||||||||
Sbjct: 189 gtacctgcccgggcggccgctcga 212
>gb|AW698352.1|AW698352 g34 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 365
Score = 46.1 bits (23), Expect = 4e-005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 774 gtacctgcccgggcggccgctcg 796
|||||||||||||||||||||||
Sbjct: 23 gtacctgcccgggcggccgctcg 1
>gb|AW698688.1|AW698688 R12 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 356
Score = 46.1 bits (23), Expect = 4e-005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 774 gtacctgcccgggcggccgctcg 796
|||||||||||||||||||||||
Sbjct: 23 gtacctgcccgggcggccgctcg 1
>gb|AW698698.1|AW698698 R146 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 326
Score = 46.1 bits (23), Expect = 4e-005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 774 gtacctgcccgggcggccgctcg 796
|||||||||||||||||||||||
Sbjct: 23 gtacctgcccgggcggccgctcg 1
>gb|AW698678.1|AW698678 R113 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 252
Score = 44.1 bits (22), Expect = 1e-004
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 776 acctgcccgggcggccgctcga 797
||||||||||||||||||||||
Sbjct: 231 acctgcccgggcggccgctcga 252
>gb|AW698679.1|AW698679 R115 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 418
Score = 44.1 bits (22), Expect = 1e-004
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 776 acctgcccgggcggccgctcga 797
||||||||||||||||||||||
Sbjct: 22 acctgcccgggcggccgctcga 1
>gb|AW698717.1|AW698717 R96 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 384
Score = 44.1 bits (22), Expect = 1e-004
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 776 acctgcccgggcggccgctcga 797
||||||||||||||||||||||
Sbjct: 363 acctgcccgggcggccgctcga 384
>gb|AW698718.1|AW698718 R98 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 330
Score = 44.1 bits (22), Expect = 1e-004
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 776 acctgcccgggcggccgctcga 797
||||||||||||||||||||||
Sbjct: 309 acctgcccgggcggccgctcga 330
>gb|AW698777.1|AW698777 r361 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 340
Score = 44.1 bits (22), Expect = 1e-004
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 777 cctgcccgggcggccgctcgaa 798
||||||||||||||||||||||
Sbjct: 312 cctgcccgggcggccgctcgaa 333
>gb|AW698886.1|AW698886 r151 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 129
Score = 44.1 bits (22), Expect = 1e-004
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 773 ggtacctgcccgggcggccgct 794
||||||||||||||||||||||
Sbjct: 25 ggtacctgcccgggcggccgct 4
>gb|AW698895.1|AW698895 r3 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 370
Score = 44.1 bits (22), Expect = 1e-004
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 776 acctgcccgggcggccgctcga 797
||||||||||||||||||||||
Sbjct: 349 acctgcccgggcggccgctcga 370
>gb|AW698338.1|AW698338 G1 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 483
Score = 42.1 bits (21), Expect = 6e-004
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 776 acctgcccgggcggccgctcg 796
|||||||||||||||||||||
Sbjct: 21 acctgcccgggcggccgctcg 1
>gb|AW698354.1|AW698354 g40 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 307
Score = 42.1 bits (21), Expect = 6e-004
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcgaa 798
|||||||||||||| ||||||||||
Sbjct: 261 gtacctgcccgggctgccgctcgaa 285
>gb|AW698402.1|AW698402 G249 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 316
Score = 42.1 bits (21), Expect = 6e-004
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 778 ctgcccgggcggccgctcgaa 798
|||||||||||||||||||||
Sbjct: 289 ctgcccgggcggccgctcgaa 309
>gb|AW698697.1|AW698697 R145 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 354
Score = 42.1 bits (21), Expect = 6e-004
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 774 gtacctgcccgggcggccgct 794
|||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgct 4
>gb|DQ122784.1| Medicago sativa clone C43 putative splicing factor Prp8 mRNA,
partial cds
Length = 552
Score = 42.1 bits (21), Expect = 6e-004
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcgaa 798
||||||| |||||||||||||||||
Sbjct: 479 gtacctggccgggcggccgctcgaa 503
>gb|AW698711.1|AW698711 R89 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 343
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 776 acctgcccgggcggccgctc 795
||||||||||||||||||||
Sbjct: 322 acctgcccgggcggccgctc 341
>gb|AJ888497.1|AJ888497 AJ888497 Medicago sativa subsp. x varia 4-day-old Medicago sativa
subsp. x varia cDNA, mRNA sequence
Length = 561
Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 776 acctgcccgggcggccgctc 795
||||||||||||||||||||
Sbjct: 538 acctgcccgggcggccgctc 557
>gb|AJ888498.1|AJ888498 AJ888498 Medicago sativa subsp. x varia 4-day-old Medicago sativa
subsp. x varia cDNA, mRNA sequence
Length = 530
Score = 40.1 bits (20), Expect = 0.002
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcga 797
|||||||||||||||| |||||||
Sbjct: 507 gtacctgcccgggcgggcgctcga 530
>gb|AW698526.1|AW698526 g320 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 223
Score = 38.2 bits (19), Expect = 0.009
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 774 gtacctgcccgggcggccgctcg 796
||||||| |||||||||||||||
Sbjct: 24 gtacctgtccgggcggccgctcg 2
>gb|AW698680.1|AW698680 R116 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 290
Score = 38.2 bits (19), Expect = 0.009
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 769 gacaggtacctgcccgggcggccgctc 795
|||| |||||||||||||||| |||||
Sbjct: 263 gacaagtacctgcccgggcgggcgctc 289
>gb|AW698699.1|AW698699 R149 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 275
Score = 38.2 bits (19), Expect = 0.009
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 776 acctgcccgggcggccgct 794
|||||||||||||||||||
Sbjct: 22 acctgcccgggcggccgct 4
>gb|AW698682.1|AW698682 R120 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 181
Score = 36.2 bits (18), Expect = 0.037
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 776 acctgcccgggcggccgctcg 796
||||||||||||| |||||||
Sbjct: 21 acctgcccgggcgnccgctcg 1
>gb|AW698346.1|AW698346 G75 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 225
Score = 34.2 bits (17), Expect = 0.14
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 773 ggtacctgcccgggcgg 789
|||||||||||||||||
Sbjct: 209 ggtacctgcccgggcgg 225
>gb|AW698490.1|AW698490 g454 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 115
Score = 34.2 bits (17), Expect = 0.14
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 774 gtacctgcccgggcggccgct 794
||||||| |||||||||||||
Sbjct: 24 gtacctggccgggcggccgct 4
>gb|AW698492.1|AW698492 g456 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 110
Score = 34.2 bits (17), Expect = 0.14
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 774 gtacctgcccgggcggccgct 794
||||||| |||||||||||||
Sbjct: 24 gtacctggccgggcggccgct 4
>gb|AW698731.1|AW698731 r302 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 149
Score = 34.2 bits (17), Expect = 0.14
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 781 cccgggcggccgctcga 797
|||||||||||||||||
Sbjct: 125 cccgggcggccgctcga 141
>gb|AW698884.1|AW698884 r147 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 178
Score = 34.2 bits (17), Expect = 0.14
Identities = 24/25 (96%), Gaps = 1/25 (4%)
Strand = Plus / Minus
Query: 774 gtacctgcccgggc-ggccgctcga 797
|||||||||||||| ||||||||||
Sbjct: 25 gtacctgcccgggcgggccgctcga 1
>gb|AW698887.1|AW698887 r152 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 198
Score = 34.2 bits (17), Expect = 0.14
Identities = 24/25 (96%), Gaps = 1/25 (4%)
Strand = Plus / Plus
Query: 774 gtacctgcccggg-cggccgctcga 797
||||||||||||| |||||||||||
Sbjct: 174 gtacctgcccgggccggccgctcga 198
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1713
Number of Sequences: 7669
Number of extensions: 1713
Number of successful extensions: 532
Number of sequences better than 0.5: 41
Number of HSP's better than 0.5 without gapping: 39
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 486
Number of HSP's gapped (non-prelim): 48
length of query: 798
length of database: 3,745,706
effective HSP length: 16
effective length of query: 782
effective length of database: 3,623,002
effective search space: 2833187564
effective search space used: 2833187564
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)