BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 5351892.2.1
         (466 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO513496.1|CO513496  s13dSG12A1200085_139774 Glandular tr...    34   0.083
gb|CO514402.1|CO514402  s13dSG36B0700059_327464 Glandular tr...    34   0.083
gb|CO515002.1|CO515002  s13dSG26B0700061_397509 Glandular tr...    34   0.083
gb|CO512310.1|CO512310  s13dSG68E0200007_114134 Glandular tr...    32   0.33 
gb|CO515406.1|CO515406  s13dSG50A1000081_417871 Glandular tr...    32   0.33 
gb|CO516021.1|CO516021  s13dSG64A0700053_445370 Glandular tr...    32   0.33 
gb|CO517016.1|CO517016  s13dSG31A1200087_468578 Glandular tr...    32   0.33 
emb|AJ966572.1|  Medicago sativa subsp. x varia mRNA for put...    32   0.33 

>gb|CO513496.1|CO513496 s13dSG12A1200085_139774 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 592

 Score = 34.2 bits (17), Expect = 0.083
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 421 aaggaagagaaacatgt 437
           |||||||||||||||||
Sbjct: 530 aaggaagagaaacatgt 546



>gb|CO514402.1|CO514402 s13dSG36B0700059_327464 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 605

 Score = 34.2 bits (17), Expect = 0.083
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 421 aaggaagagaaacatgt 437
           |||||||||||||||||
Sbjct: 334 aaggaagagaaacatgt 350



>gb|CO515002.1|CO515002 s13dSG26B0700061_397509 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 469

 Score = 34.2 bits (17), Expect = 0.083
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 421 aaggaagagaaacatgt 437
           |||||||||||||||||
Sbjct: 334 aaggaagagaaacatgt 350



>gb|CO512310.1|CO512310 s13dSG68E0200007_114134 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 586

 Score = 32.2 bits (16), Expect = 0.33
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 299 ttcttattcttcttct 314
           ||||||||||||||||
Sbjct: 148 ttcttattcttcttct 163



>gb|CO515406.1|CO515406 s13dSG50A1000081_417871 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 475

 Score = 32.2 bits (16), Expect = 0.33
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 299 ttcttattcttcttct 314
           ||||||||||||||||
Sbjct: 74  ttcttattcttcttct 89



>gb|CO516021.1|CO516021 s13dSG64A0700053_445370 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 185

 Score = 32.2 bits (16), Expect = 0.33
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 299 ttcttattcttcttct 314
           ||||||||||||||||
Sbjct: 99  ttcttattcttcttct 84



>gb|CO517016.1|CO517016 s13dSG31A1200087_468578 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 552

 Score = 32.2 bits (16), Expect = 0.33
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 299 ttcttattcttcttct 314
           ||||||||||||||||
Sbjct: 99  ttcttattcttcttct 114



>emb|AJ966572.1| Medicago sativa subsp. x varia mRNA for putative Rho GTPase (rop3
           gene)
          Length = 1106

 Score = 32.2 bits (16), Expect = 0.33
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 299 ttcttattcttcttct 314
           ||||||||||||||||
Sbjct: 122 ttcttattcttcttct 107



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1166
Number of Sequences: 7669
Number of extensions: 1166
Number of successful extensions: 384
Number of sequences better than  0.5: 8
Number of HSP's better than  0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 374
Number of HSP's gapped (non-prelim): 10
length of query: 466
length of database: 3,745,706
effective HSP length: 15
effective length of query: 451
effective length of database: 3,630,671
effective search space: 1637432621
effective search space used: 1637432621
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)