BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4580194.2.1
(542 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO511902.1|CO511902 s13dSG05D0200026_103704 Glandular tr... 32 0.38
gb|CO512484.1|CO512484 s13dSG100E090006_114482 Glandular tr... 32 0.38
gb|CO512698.1|CO512698 s13dSG19E1000071_121322 Glandular tr... 32 0.38
gb|CO515673.1|CO515673 s13dSG60D1000090_419495 Glandular tr... 32 0.38
gb|CO515965.1|CO515965 s13dSG61D0400032_445258 Glandular tr... 32 0.38
>gb|CO511902.1|CO511902 s13dSG05D0200026_103704 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 577
Score = 32.2 bits (16), Expect = 0.38
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 346 caacgacaccatcacc 361
||||||||||||||||
Sbjct: 416 caacgacaccatcacc 401
>gb|CO512484.1|CO512484 s13dSG100E090006_114482 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 573
Score = 32.2 bits (16), Expect = 0.38
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 346 caacgacaccatcacc 361
||||||||||||||||
Sbjct: 126 caacgacaccatcacc 111
>gb|CO512698.1|CO512698 s13dSG19E1000071_121322 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 552
Score = 32.2 bits (16), Expect = 0.38
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 346 caacgacaccatcacc 361
||||||||||||||||
Sbjct: 439 caacgacaccatcacc 424
>gb|CO515673.1|CO515673 s13dSG60D1000090_419495 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 521
Score = 32.2 bits (16), Expect = 0.38
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 346 caacgacaccatcacc 361
||||||||||||||||
Sbjct: 437 caacgacaccatcacc 422
>gb|CO515965.1|CO515965 s13dSG61D0400032_445258 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 472
Score = 32.2 bits (16), Expect = 0.38
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 333 gcaagtactgctgcaa 348
||||||||||||||||
Sbjct: 378 gcaagtactgctgcaa 393
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 675
Number of Sequences: 7669
Number of extensions: 675
Number of successful extensions: 169
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 164
Number of HSP's gapped (non-prelim): 5
length of query: 542
length of database: 3,745,706
effective HSP length: 16
effective length of query: 526
effective length of database: 3,623,002
effective search space: 1905699052
effective search space used: 1905699052
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)