BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4573929.2.1
(691 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO516970.1|CO516970 s13dSG81C0400022_468486 Glandular tr... 32 0.49
gb|AY651249.1| Medicago sativa heat shock factor 1b (hsf1b)... 32 0.49
gb|DQ122763.1| Medicago sativa clone A5 embryonic abundant ... 32 0.49
gb|DQ122765.1| Medicago sativa clone NB4 embryonic abundant... 32 0.49
gb|DQ122802.1| Medicago sativa clone NC7 embryonic abundant... 32 0.49
gb|DQ122819.1| Medicago sativa clone RH7 mRNA sequence 32 0.49
gb|DQ122823.1| Medicago sativa clone NC5 mRNA sequence 32 0.49
>gb|CO516970.1|CO516970 s13dSG81C0400022_468486 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 370
Score = 32.2 bits (16), Expect = 0.49
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 140 tgttggaaatggtggc 155
||||||||||||||||
Sbjct: 198 tgttggaaatggtggc 213
>gb|AY651249.1| Medicago sativa heat shock factor 1b (hsf1b) mRNA, complete cds
Length = 1778
Score = 32.2 bits (16), Expect = 0.49
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 354 cgacaacagcaaatga 369
||||||||||||||||
Sbjct: 745 cgacaacagcaaatga 760
>gb|DQ122763.1| Medicago sativa clone A5 embryonic abundant protein precursor-like
protein mRNA, partial cds
Length = 827
Score = 32.2 bits (16), Expect = 0.49
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 405 caagcagcagccttat 420
||||||||||||||||
Sbjct: 822 caagcagcagccttat 807
>gb|DQ122765.1| Medicago sativa clone NB4 embryonic abundant protein precursor-like
protein mRNA, partial cds
Length = 511
Score = 32.2 bits (16), Expect = 0.49
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 405 caagcagcagccttat 420
||||||||||||||||
Sbjct: 506 caagcagcagccttat 491
>gb|DQ122802.1| Medicago sativa clone NC7 embryonic abundant protein precursor-like
protein mRNA, partial cds
Length = 584
Score = 32.2 bits (16), Expect = 0.49
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 405 caagcagcagccttat 420
||||||||||||||||
Sbjct: 579 caagcagcagccttat 564
>gb|DQ122819.1| Medicago sativa clone RH7 mRNA sequence
Length = 483
Score = 32.2 bits (16), Expect = 0.49
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 405 caagcagcagccttat 420
||||||||||||||||
Sbjct: 299 caagcagcagccttat 284
>gb|DQ122823.1| Medicago sativa clone NC5 mRNA sequence
Length = 656
Score = 32.2 bits (16), Expect = 0.49
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 405 caagcagcagccttat 420
||||||||||||||||
Sbjct: 651 caagcagcagccttat 636
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1250
Number of Sequences: 7669
Number of extensions: 1250
Number of successful extensions: 356
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 349
Number of HSP's gapped (non-prelim): 7
length of query: 691
length of database: 3,745,706
effective HSP length: 16
effective length of query: 675
effective length of database: 3,623,002
effective search space: 2445526350
effective search space used: 2445526350
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)