BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3995289.2.1
(559 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO511804.1|CO511804 s13dSG02C0200018_103508 Glandular tr... 34 0.10
gb|CO511925.1|CO511925 s13dSG05F0700063_103750 Glandular tr... 32 0.40
gb|CO511981.1|CO511981 s13dSG07D0500046_103862 Glandular tr... 32 0.40
gb|CO513850.1|CO513850 s13dSG73D0200014_156362 Glandular tr... 32 0.40
gb|CO515804.1|CO515804 s13dSG54C0400023_421147 Glandular tr... 32 0.40
gb|CO516003.1|CO516003 s13dSG61G0800068_445334 Glandular tr... 32 0.40
>gb|CO511804.1|CO511804 s13dSG02C0200018_103508 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 499
Score = 34.2 bits (17), Expect = 0.10
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 529 tacacctgcttcttcgg 545
|||||||||||||||||
Sbjct: 272 tacacctgcttcttcgg 256
>gb|CO511925.1|CO511925 s13dSG05F0700063_103750 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 472
Score = 32.2 bits (16), Expect = 0.40
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 530 acacctgcttcttcgg 545
||||||||||||||||
Sbjct: 275 acacctgcttcttcgg 260
>gb|CO511981.1|CO511981 s13dSG07D0500046_103862 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 488
Score = 32.2 bits (16), Expect = 0.40
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 530 acacctgcttcttcgg 545
||||||||||||||||
Sbjct: 270 acacctgcttcttcgg 255
>gb|CO513850.1|CO513850 s13dSG73D0200014_156362 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 481
Score = 32.2 bits (16), Expect = 0.40
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 530 acacctgcttcttcgg 545
||||||||||||||||
Sbjct: 270 acacctgcttcttcgg 255
>gb|CO515804.1|CO515804 s13dSG54C0400023_421147 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 420
Score = 32.2 bits (16), Expect = 0.40
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 357 cggcggcggcggcggc 372
||||||||||||||||
Sbjct: 141 cggcggcggcggcggc 126
>gb|CO516003.1|CO516003 s13dSG61G0800068_445334 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 470
Score = 32.2 bits (16), Expect = 0.40
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 530 acacctgcttcttcgg 545
||||||||||||||||
Sbjct: 271 acacctgcttcttcgg 256
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 536
Number of Sequences: 7669
Number of extensions: 536
Number of successful extensions: 157
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 147
Number of HSP's gapped (non-prelim): 8
length of query: 559
length of database: 3,745,706
effective HSP length: 16
effective length of query: 543
effective length of database: 3,623,002
effective search space: 1967290086
effective search space used: 1967290086
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)