BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3923331.2.1
(496 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY082444.1| Medicago sativa clone MS1-3FTa alpha 1,3 fuc... 44 9e-005
gb|AY082445.1| Medicago sativa clone MS1-3FTb alpha 1,3 fuc... 44 9e-005
gb|DQ122836.1| Medicago sativa clone QH10 aminoimidazolecar... 32 0.35
>gb|AY082444.1| Medicago sativa clone MS1-3FTa alpha 1,3 fucosyltransferase mRNA,
complete cds
Length = 2027
Score = 44.1 bits (22), Expect = 9e-005
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 196 tacacaaaaattacttcaagctttgcacagggat 229
||||||||||||||||||| ||| ||||| ||||
Sbjct: 1721 tacacaaaaattacttcaaacttggcacaaggat 1688
Score = 32.2 bits (16), Expect = 0.35
Identities = 25/28 (89%)
Strand = Plus / Minus
Query: 369 cttccatacaggaacgtggttgagggac 396
||||||||||||||| || || ||||||
Sbjct: 1548 cttccatacaggaacatgattcagggac 1521
>gb|AY082445.1| Medicago sativa clone MS1-3FTb alpha 1,3 fucosyltransferase mRNA,
complete cds
Length = 2134
Score = 44.1 bits (22), Expect = 9e-005
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 196 tacacaaaaattacttcaagctttgcacagggat 229
||||||||||||||||||| ||| ||||| ||||
Sbjct: 1721 tacacaaaaattacttcaaacttggcacaaggat 1688
Score = 32.2 bits (16), Expect = 0.35
Identities = 25/28 (89%)
Strand = Plus / Minus
Query: 369 cttccatacaggaacgtggttgagggac 396
||||||||||||||| || || ||||||
Sbjct: 1548 cttccatacaggaacatgattcagggac 1521
>gb|DQ122836.1| Medicago sativa clone QH10 aminoimidazolecarboximide ribonucleotide
transformylase/inosine monophosphate cyclohydrolase
mRNA, partial cds
Length = 587
Score = 32.2 bits (16), Expect = 0.35
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 133 gaaactcgcacacagagttc 152
|||||||||||||| |||||
Sbjct: 540 gaaactcgcacacacagttc 521
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1467
Number of Sequences: 7669
Number of extensions: 1467
Number of successful extensions: 310
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 303
Number of HSP's gapped (non-prelim): 7
length of query: 496
length of database: 3,745,706
effective HSP length: 16
effective length of query: 480
effective length of database: 3,623,002
effective search space: 1739040960
effective search space used: 1739040960
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)